Support vector machines with selective kernel scaling for protein classification and identification of key amino acid positions. - Nela Zavaljevski; Fred J. Stevens; Jaques Reifman (Bioinform., 2002)

Classifying noisy protein sequence data: a case study of immunoglobulin light chains. - Chenggang Yu; Nela Zavaljevski; Fred J. Stevens; Kelly Yackovich; Jaques Reifman (ISMB (Supplement of Bioinformatics), 2005)

Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays. - Waibhav Tembe; Nela Zavaljevski; Elizabeth A. Bode; Catherine Chase; Jeanne Geyer; Leonard P. Wasieloski; Gary Benson; Jaques Reifman (Bioinform., 2007)

A high-throughput pipeline for designing microarray-based pathogen diagnostic assays. - Ravi Vijaya Satya; Nela Zavaljevski; Kamal Kumar 002; Jaques Reifman (BMC Bioinform., 2008)

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation. - Chenggang Yu; Nela Zavaljevski; Valmik Desai; Seth Johnson; Fred J. Stevens; Jaques Reifman (BMC Bioinform., 2008)

A high-throughput pipeline for the design of real-time PCR signatures. - Ravi Vijaya Satya; Kamal Kumar 002; Nela Zavaljevski; Jaques Reifman (BMC Bioinform., 2010)

Accelerating Biomedical Research in Designing Diagnostic Assays, Drugs, and Vaccines. - Anders Wallqvist; Nela Zavaljevski; Ravi Vijaya Satya; Rajkumar Bondugula; Valmik Desai; Xin Hu; Kamal Kumar 002; Michael S. Lee; In-Chul Yeh; Chenggang Yu; Jaques Reifman (Comput. Sci. Eng., 2010)

SNIT: SNP identification for strain typing. - Ravi Vijaya Satya; Nela Zavaljevski; Jaques Reifman (Source Code Biol. Medicine, 2011)

DBSecSys: a database of Burkholderia mallei secretion systems. - Vesna Memievi; Kamal Kumar 002; Li Cheng; Nela Zavaljevski; David DeShazer; Anders Wallqvist; Jaques Reifman (BMC Bioinform., 2014)

Mining Host-Pathogen Protein Interactions to Characterize Burkholderia mallei Infectivity Mechanisms. - Vesna Memisevic; Nela Zavaljevski; Seesandra V. Rajagopala; Keehwan Kwon; Rembert Pieper; David DeShazer; Jaques Reifman; Anders Wallqvist (PLoS Comput. Biol., 2015)

DBSecSys 2.0: a database of Burkholderia mallei and Burkholderia pseudomallei secretion systems. - Vesna Memisevic; Kamal Kumar 002; Nela Zavaljevski; David DeShazer; Anders Wallqvist; Jaques Reifman (BMC Bioinform., 2016)