SKPDB: a structural database of shikimate pathway enzymes. - Helen A. Arcuri; Geraldo F. D. Zafalon; Evandro A. Marucci; Carlos E. Bonalumi; Nelson José Freitas da Silveira; José Marcio Machado; Walter F. de Azevedo Jr.; Mário S. Palma (BMC Bioinform., 2010)

HNdb: an integrated database of gene and protein information on head and neck squamous cell carcinoma. - Tiago Henrique Trojahn; Nelson José Freitas da Silveira; Arthur Henrique Cunha Volpato; Mayra Mataruco Mioto; Ana Carolina Buzzo Stefanini; Adil Bachir Fares; João Gustavo da Silva Castro Andrade; Carolina Masson; Rossana Verónica Mendoza López; Fabio Daumas Nunes; Luiz Paulo Kowalski; Patricia Severino; et al. (Database J. Biol. Databases Curation, 2016)

MB-Isoster: A software for bioisosterism simulation. - Thiago Castilho Elias; Humberto Cesar Brandão de Oliveira; Nelson José Freitas da Silveira (J. Comput. Chem., 2018)

In Silico Identification of Potential Inhibitors of the Wnt Signaling Pathway in Human Breast Cancer. - Icaro Alves Pinto; Nelson José Freitas da Silveira (J. Comput. Biol., 2020)

SAnDReS 2.0: Development of machine-learning models to explore the scoring function space. - Walter Filgueira de Azevedo Jr.; Rodrigo Quiroga; Marcos Ariel Villarreal; Nelson José Freitas da Silveira; Gabriela Bitencourt-Ferreira; Amauri Duarte da Silva; Martina Veit-Acosta; Patricia Rufino Oliveira; Marco Tutone; Nadezhda Yu. Biziukova; Vladimir Poroikov; Olga A. Tarasova; et al. (J. Comput. Chem., 2024)

Applying the bioisosterism strategy to obtain lead compounds against SARS-CoV-2 cysteine proteases: An in-silico approach. - João Ricardo Bueno de Morais Borba; Leonardo Pereira de Araújo; Marcia Paranho Veloso; Nelson José Freitas da Silveira (J. Comput. Chem., 2024)