Deep Neural Network Architecture for Drug-Target Interaction Prediction. - Nelson R. C. Monteiro; Bernardete Ribeiro; Joel P. Arrais (ICANN (Workshop), 2019)

Exploring a Siamese Neural Network Architecture for One-Shot Drug Discovery. - Luis H. M. Torres; Nelson R. C. Monteiro; José Luís Oliveira; Joel Arrais; Bernardete Ribeiro (BIBE, 2020)

Drug-Target Interaction Prediction: End-to-End Deep Learning Approach. - Nelson R. C. Monteiro; Bernardete Ribeiro; Joel P. Arrais (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Explainable deep drug-target representations for binding affinity prediction. - Nelson R. C. Monteiro; Carlos J. V. Simões; Henrique V. Ávila; Maryam Abbasi; José Luís Oliveira; Joel P. Arrais (BMC Bioinform., 2022)

DTITR: End-to-end drug-target binding affinity prediction with transformers. - Nelson R. C. Monteiro; José Luís Oliveira; Joel P. Arrais (Comput. Biol. Medicine, 2022)

Designing optimized drug candidates with Generative Adversarial Network. - Maryam Abbasi; Beatriz P. Santos; Tiago C. Pereira; Raul Sofia; Nelson R. C. Monteiro; Carlos J. V. Simões; Rui M. M. Brito; Bernardete Ribeiro; José Luís Oliveira; Joel P. Arrais (J. Cheminformatics, 2022)

Correction to: Designing optimized drug candidates with Generative Adversarial Network. - Maryam Abbasi; Beatriz P. Santos; Tiago C. Pereira; Raul Sofa; Nelson R. C. Monteiro; Carlos J. V. Simões; Rui M. M. Brito; Bernardete Ribeiro; José Luís Oliveira; Joel P. Arrais (J. Cheminformatics, 2022)

FSM-DDTR: End-to-end feedback strategy for multi-objective De Novo drug design using transformers. - Nelson R. C. Monteiro; Tiago Pereira 001; Ana Catarina D. Machado; José Luís Oliveira; Maryam Abbasi; Joel P. Arrais (Comput. Biol. Medicine, 2023)

TAG-DTA: Binding-region-guided strategy to predict drug-target affinity using transformers. - Nelson R. C. Monteiro; José Luís Oliveira; Joel P. Arrais (Expert Syst. Appl., 2024)