Probability of graphs with large spectral gap by multicanonical Monte Carlo. - Nen Saito; Yukito Iba (Comput. Phys. Commun., 2011)

Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates. - Jumpei F. Yamagishi; Nen Saito; Kunihiko Kaneko (PLoS Comput. Biol., 2016)

Comparative mapping of crawling-cell morphodynamics in deep learning-based feature space. - Daisuke Imoto; Nen Saito; Akihiko Nakajima; Gen Honda; Motohiko Ishida; Toyoko Sugita; Sayaka Ishihara; Koko Katagiri; Chika Okimura; Yoshiaki Iwadate; Satoshi Sawai (PLoS Comput. Biol., 2021)

Adaptation of metabolite leakiness leads to symbiotic chemical exchange and to a resilient microbial ecosystem. - Jumpei F. Yamagishi; Nen Saito; Kunihiko Kaneko (PLoS Comput. Biol., 2021)

Rare-event sampling analysis uncovers the fitness landscape of the genetic code. - Yuji Omachi; Nen Saito; Chikara Furusawa (PLoS Comput. Biol., 2023)