FRESA: A Frequency-Sensitive Sampling-Based Approach for Data Race Detection. - Neng Huang; Zhiyuan Shao; Hai Jin 001 (NPC, 2013)

On the Decision Tree Complexity of String Matching. - Xiaoyu He; Neng Huang; Xiaoming Sun 001 (ESA, 2018)

Improved Kernels for Several Problems on Planar Graphs. - Qilong Feng; Beilin Zhuo; Guanlan Tan; Neng Huang; Jianxin Wang 001 (FAW, 2018)

The idemetric property: when most distances are (almost) the same. - George Barmpalias; Neng Huang; Andrew Lewis-Pye; Angsheng Li; Xuechen Li; Yicheng Pan 001; Tim Roughgarden (CoRR, 2018)

Dealing with several parameterized problems by random methods. - Qilong Feng; Neng Huang; Xiong Jiang; Jianxin Wang 001 (Theor. Comput. Sci., 2018)

An attention-based neural network basecaller for Oxford Nanopore sequencing data. - Neng Huang; Fan Nie; Peng Ni; Feng Luo 001; Jianxin Wang 001 (BIBM, 2019)

DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning. - Peng Ni; Neng Huang; Zhi Zhang; De-Peng Wang; Fan Liang; Yu Miao; Chuan-Le Xiao; Feng Luo 001; Jianxin Wang 001 (Bioinform., 2019)

Improved PTAS for the constrained k-means problem. - Qilong Feng; Jiaxin Hu; Neng Huang; Jianxin Wang 001 (J. Comb. Optim., 2019)

On the Approximability of Presidential Type Predicates. - Neng Huang; Aaron Potechin (APPROX-RANDOM, 2020)

CLPred: a sequence-based protein crystallization predictor using BLSTM neural network. - Wenjing Xuan; Ning Liu; Neng Huang; Yaohang Li; Jianxin Wang 001 (Bioinform., 2020)

New kernels for several problems on planar graphs. - Guanlan Tan; Qilong Feng; Beilin Zhuo; Neng Huang; Jianxin Wang 001 (Theor. Comput. Sci., 2020)

On the Mysteries of MAX NAE-SAT. - Joshua Brakensiek; Neng Huang; Aaron Potechin; Uri Zwick (SODA, 2021)

MultiNanopolish: refined grouping method for reducing redundant calculations in Nanopolish. - Kang Hu; Neng Huang; You Zou; Xingyu Liao; Jianxin Wang 001 (Bioinform., 2021)

NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks. - Neng Huang; Fan Nie; Peng Ni; Feng Luo 001; Xin Gao 001; Jianxin Wang 001 (Bioinform., 2021)

A Novel Hash Chain-Based Data Availability Monitoring Method for Off-site Disaster Recovery Architecture. - Neng Huang; Junxing Zhu; Chaonian Guo; Shuhan Cheng; Xiaoyong Li 002 (J. Circuits Syst. Comput., 2021)

BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer. - Neng Huang; Fan Nie; Peng Ni; Xin Gao 001; Feng Luo 001; Jianxin Wang 001 (Briefings Bioinform., 2022)

Fec: a fast error correction method based on two-rounds overlapping and caching. - Jun Zhang; Fan Nie; Neng Huang; Peng Ni; Feng Luo 001; Jianxin Wang 001 (Bioinform., 2022)

SACall: A Neural Network Basecaller for Oxford Nanopore Sequencing Data Based on Self-Attention Mechanism. - Neng Huang; Fan Nie; Peng Ni; Feng Luo 001; Jianxin Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Separating MAX 2-AND, MAX DI-CUT and MAX CUT. - Joshua Brakensiek; Neng Huang; Aaron Potechin; Uri Zwick (FOCS, 2023)

Local algorithms and the failure of log-depth quantum advantage on sparse random CSPs. - Antares Chen; Neng Huang; Kunal Marwaha (CoRR, 2023)

NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data. - Neng Huang; Minghua Xu 005; Fan Nie; Peng Ni; Chuan-Le Xiao; Feng Luo 001; Jianxin Wang 001 (Bioinform., 2023)

compleasm: a faster and more accurate reimplementation of BUSCO. - Neng Huang; Heng Li 002 (Bioinform., 2023)

Tight approximability of MAX 2-SAT and relatives, under UGC. - Joshua Brakensiek; Neng Huang; Uri Zwick (SODA, 2024)

On the Constant-Factor Approximability of Minimum Cost Constraint Satisfaction Problems. - Ian DeHaan; Neng Huang; Euiwoong Lee (APPROX/RANDOM, 2025)

Hardness of Sampling for the Anti-Ferromagnetic Ising Model on Random Graphs. - Neng Huang; Will Perkins 001; Aaron Potechin (ITCS, 2025)