SVM-based miRNA: MiRNA∗ duplex prediction. - Nestoras Karathanasis; Ioannis Tsamardinos; Angelos P. Armen; Panayiota Poirazi (BIBE, 2012)

A bioinformatics approach for investigating the determinants of Drosha processing. - Nestoras Karathanasis; Ioannis Tsamardinos; Panayiota Poirazi (BIBE, 2013)

Don't use a cannon to kill the ... miRNA mosquito. - Nestoras Karathanasis; Ioannis Tsamardinos; Panayiota Poirazi (Bioinform., 2014)

IsoMiRmap: fast, deterministic and exhaustive mining of isomiRs from short RNA-seq datasets. - Phillipe Loher; Nestoras Karathanasis; Eric Londin; Paul F. Bray; Venetia Pliatsika; Aristeidis G. Telonis; Isidore Rigoutsos (Bioinform., 2021)

Reproducibility efforts as a teaching tool: A pilot study. - Nestoras Karathanasis; Daniel Hwang; Vibol Heng; Rimal Abhimannyu; Phillip Slogoff-Sevilla; Gina Buchel; Victoria Frisbie; Peiyao Li; Dafni Kryoneriti; Isidore Rigoutsos (PLoS Comput. Biol., 2022)

Combining clinical and molecular data for personalized treatment in acute myeloid leukemia: A machine learning approach. - Nestoras Karathanasis; Panayiota L. Papasavva; Anastasis Oulas; George M. Spyrou (Comput. Methods Programs Biomed., 2024)

Ranking of cell clusters in a single-cell RNA-sequencing analysis framework using prior knowledge. - Anastasis Oulas; Kyriaki Savva; Nestoras Karathanasis; George M. Spyrou (PLoS Comput. Biol., 2024)