OrthoParaMap: Distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies. - Steven B. Cannon; Nevin D. Young (BMC Bioinform., 2003)

MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptome. - Anne-Françoise J. Lamblin; John A. Crow; James E. Johnson; Kevin A. T. Silverstein; Timothy M. Kunau; Alan Kilian; Diane Benz; Martina V. Stromvik; Gabriella Endré; Kathryn A. VandenBosch; Douglas R. Cook; Nevin D. Young; et al. (Nucleic Acids Res., 2003)

Detecting Small Plant Peptides Using SPADA (Small Peptide Alignment Discovery Application). - Peng Zhou; Kevin A. T. Silverstein; Liangliang Gao; Jonathan D. Walton; Sumitha Nallu; Joseph Guhlin; Nevin D. Young (BMC Bioinform., 2013)

ODG: Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding. - Joseph Guhlin; Kevin A. T. Silverstein; Peng Zhou; Peter Tiffin; Nevin D. Young (BMC Bioinform., 2017)