Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data - (Extended Abstract). - Ngoc Hieu Tran; Kwok Pui Choi; Louxin Zhang (RECOMB, 2013)

AMAS: optimizing the partition and filtration of adaptive seeds to speed up read mapping. - Ngoc Hieu Tran; Xin Chen (CoRR, 2015)

Efficient Verifiable Computation of Linear and Quadratic Functions over Encrypted Data. - Ngoc Hieu Tran; HweeHwa Pang; Robert H. Deng (AsiaCCS, 2016)

Privacy-Preserving and Verifiable Data Aggregation. - Ngoc Hieu Tran; Robert H. Deng; HweeHwa Pang (SG-CRC, 2016)

AMAS: Optimizing the Partition and Filtration of Adaptive Seeds to Speed up Read Mapping. - Ngoc Hieu Tran; Xin Chen 037 (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Protein identification with deep learning: from abc to xyz. - Ngoc Hieu Tran; Zachariah Levine; Lei Xin; Baozhen Shan; Ming Li (CoRR, 2017)

CCA Secure encryption supporting authorized equality test on ciphertexts in standard model and its applications. - Yujue Wang; HweeHwa Pang; Ngoc Hieu Tran; Robert H. Deng (Inf. Sci., 2017)

De novo peptide sequencing by deep learning. - Ngoc Hieu Tran; Xianglilan Zhang; Lei Xin; Baozhen Shan; Ming Li (Proc. Natl. Acad. Sci. USA, 2017)

DeepIso: A Deep Learning Model for Peptide Feature Detection. - Fatema Tuz Zohora; Ngoc Hieu Tran; Xianglilan Zhang; Lei Xin; Baozhen Shan; Ming Li (CoRR, 2018)

Hybrid privacy-preserving clinical decision support system in fog-cloud computing. - Ximeng Liu; Robert H. Deng; Yang Yang 026; Ngoc Hieu Tran; Shangping Zhong (Future Gener. Comput. Syst., 2018)

DeepNovoV2: Better de novo peptide sequencing with deep learning. - Rui Qiao 001; Ngoc Hieu Tran; Ming Li 001; Lei Xin; Baozhen Shan; Ali Ghodsi 001 (CoRR, 2019)

PointIso: Point Cloud Based Deep Learning Model for Detecting Arbitrary-Precision Peptide Features in LC-MS Map through Attention Based Segmentation. - Fatema Tuz Zohora; M. Ziaur Rahman; Ngoc Hieu Tran; Lei Xin; Baozhen Shan; Ming Li (CoRR, 2020)

Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines. - Ngoc Hieu Tran; Rui Qiao 001; Lei Xin; Xin Chen; Baozhen Shan; Ming Li 001 (Nat. Mach. Intell., 2020)

Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices. - Rui Qiao 001; Ngoc Hieu Tran; Lei Xin; Xin Chen; Ming Li 001; Baozhen Shan; Ali Ghodsi 001 (Nat. Mach. Intell., 2021)

A tale of solving two computational challenges in protein science: neoantigen prediction and protein structure prediction. - Ngoc Hieu Tran; Jinbo Xu; Ming Li 001 (Briefings Bioinform., 2022)