Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly. - Joyce Kang; Benjamin Siranosian; Eli Moss; Niaz Banaei; Tessa Andermann; Ami Bhatt (BMC Bioinform., 2019)

Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning. - Chi-Sing Ho; Neal Jean; Catherine A. Hogan; Lena Blackmon; Stefanie S. Jeffrey; Mark Holodniy; Niaz Banaei; Amr A. E. Saleh; Stefano Ermon; Jennifer A. Dionne (CoRR, 2019)

A Novel Framework for the Automated Characterization of Gram-Stained Blood Culture Slides Using a Large-Scale Vision Transformer. - Jack McMahon; Naofumi Tomita; Elizabeth S. Tatishev; Adrienne A. Workman; Cristina R. Costales; Niaz Banaei; Isabella W. Martin; Saeed Hassanpour (CoRR, 2024)

Antibiotic Resistance Microbiology Dataset (ARMD): A De-identified Resource for Studying Antimicrobial Resistance Using Electronic Health Records. - Fateme Nateghi Haredasht; Fatemeh Amrollahi; Manoj Maddali; Nicholas Marshall; Stephen P. Ma; Lauren N. Cooper; Richard J. Medford; Sanjat Kanjilal; Niaz Banaei; Stanley Deresinski; Mary K. Goldstein; Steven M. Asch; et al. (CoRR, 2025)

A Multi-Phase Analysis of Blood Culture Stewardship: Machine Learning Prediction, Expert Recommendation Assessment, and LLM Automation. - Fatemeh Amrollahi; Nicholas Marshall; Fateme Nateghi Haredasht; Kameron C. Black; Aydin Zahedivash; Manoj Maddali; Stephen P. Ma; Amy Chang; Stanley Deresinski; Mary K. Goldstein; Steven M. Asch; Niaz Banaei; et al. (CoRR, 2025)