PINA v2.0: mining interactome modules. - Mark J. Cowley; Mark Pinese; Karin S. Kassahn; Nic Waddell; John V. Pearson; Sean M. Grimmond; Andrew V. Biankin; Sampsa Hautaniemi; Jianmin Wu (Nucleic Acids Res., 2012)

A plugin for the Ensembl Variant Effect Predictor that uses MaxEntScan to predict variant spliceogenicity. - Jannah Shamsani; Stephen H. Kazakoff; Irina M. Armean; Will McLaren 001; Michael T. Parsons; Bryony A Thompson; Tracy A. O'Mara; Sarah E. Hunt; Nicola Waddell; Amanda B. Spurdle (Bioinform., 2019)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)

xML-workFlow: an end-to-end explainable scikit-learn workflow for rapid biomedical experimentation. - Khoa A. Tran; John V. Pearson; Nicola Waddell (CoRR, 2025)