DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks. - Castrense Savojardo; Niccolò Bruciaferri; Giacomo Tartari; Pier Luigi Martelli; Rita Casadio (Bioinform., 2020)

Ringtail: A Python Tool for Efficient Management and Storage of Virtual Screening Results. - Althea T. Hansel-Harris; Diogo Santos-Martins; Niccolò Bruciaferri; Andreas F. Tillack; Matthew Holcomb; Stefano Forli (J. Chem. Inf. Model., 2023)

CosolvKit: a Versatile Tool for Cosolvent MD Preparation and Analysis. - Niccolò Bruciaferri; Jérôme Eberhardt; Manuel A. Llanos; Johannes R. Loeffler; Matthew Holcomb; Monica L. Fernández-Quintero; Diogo Santos-Martins; Andrew B. Ward; Stefano Forli (J. Chem. Inf. Model., 2024)