Reconstruction of influenza a virus variants from PacBio reads. - Alexander Artyomenko; Serghei Mangul; Nicholas C. Wu; Eleazar Eskin; Ren Sun; Alex Zelikovsky (ICCABS, 2014)

VGA: A method for viral quasispecies assembly from ultra-deep sequencing data. - Serghei Mangul; Nicholas C. Wu; Nicholas Mancuso; Alex Zelikovsky; Ren Sun; Eleazar Eskin (ICCABS, 2014)

Accurate viral population assembly from ultra-deep sequencing data. - Serghei Mangul; Nicholas C. Wu; Nicholas Mancuso; Alex Zelikovsky; Ren Sun; Eleazar Eskin (Bioinform., 2014)

2SNV: Quasispecies reconstruction from PacBio reads. - Alexander Artyomenko; Nicholas C. Wu; Serghei Mangul; Eleazar Eskin; Ren Sun; Alex Zelikovsky (ICCABS, 2015)

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. - Alexander Artyomenko; Nicholas C. Wu; Serghei Mangul; Eleazar Eskin; Ren Sun; Alex Zelikovsky (J. Comput. Biol., 2017)

Benchmarking of computational error-correction methods for next-generation sequencing data. - Keith Mitchell; Jaqueline J. Brito; Igor Mandric; Qiaozhen Wu; Sergey Knyazev; Sei Chang; Lana S. Martin; Aaron Karlsberg; Ekaterina Gerasimov; Russell Littman; Brian L. Hill; Nicholas C. Wu; et al. (BCB, 2020)