SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses. - Nicholas J. Eagles; Emily E. Burke; Jacob Leonard; Brianna K. Barry; Joshua M. Stolz; Louise Huuki; BaDoi N. Phan; Violeta Larios Serrato; Everardo Gutiérrez-Millán; Israel Aguilar-Ordoñez; Andrew E. Jaffe; Leonardo Collado-Torres (BMC Bioinform., 2021)

Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses. - Nicholas J. Eagles; Emily E. Burke; Jacob Leonard; Brianna K. Barry; Joshua M. Stolz; Louise Huuki; BaDoi N. Phan; Violeta Larios Serrato; Everardo Gutiérrez-Millán; Israel Aguilar-Ordoñez; Andrew E. Jaffe; Leonardo Collado-Torres (BMC Bioinform., 2021)

BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data. - Nicholas J. Eagles; Richard Wilton; Andrew E. Jaffe; Leonardo Collado-Torres (BMC Bioinform., 2023)