xBASE2: a comprehensive resource for comparative bacterial genomics. - Roy R. Chaudhuri; Nicholas J. Loman; Lori A. S. Snyder; Christopher M. Bailey; Dov J. Stekel; Mark J. Pallen (Nucleic Acids Res., 2008)

EntrezAJAX: direct web browser access to the Entrez Programming Utilities. - Nicholas J. Loman; Mark J. Pallen (Source Code Biol. Medicine, 2010)

Poretools: a toolkit for analyzing nanopore sequence data. - Nicholas J. Loman; Aaron R. Quinlan (Bioinform., 2014)

Virus genomes reveal factors that spread and sustained the Ebola epidemic. - Gytis Dudas; Luiz Max Carvalho; Trevor Bedford; Andrew J. Tatem; Guy Baele; Nuno R. Faria; Daniel J. Park; Jason T. Ladner; Armando Arias; Danny Asogun; Filip Bielejec; Sarah L. Caddy; et al. (Nat., 2017)

Establishment and cryptic transmission of Zika virus in Brazil and the Americas. - Nuno R. Faria; Joshua Quick; I. M. Claro; Julien Thézé; J. G. de Jesus; Marta Giovanetti; Moritz U. G. Kraemer; S. C. Hill; Allison Black; A. C. Da Costa; L. C. Franco; S. P. Silva; et al. (Nat., 2017)