CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED. - Matthew DeJongh; Benjamin Bockstege; Paul Frybarger; Nicholas L. Hazekamp; Joshua Kammeraad; Travis McGeehan (Bioinform., 2012)

Accelerating Comparative Genomics Workflows in a Distributed Environment with Optimized Data Partitioning. - Olivia Choudhury; Nicholas L. Hazekamp; Douglas Thain; Scott J. Emrich (CCGRID, 2014)

Expanding Tasks of Logical Workflows Into Independent Workflows for Improved Scalability. - Nicholas L. Hazekamp; Olivia Choudhury; Sandra Gesing; Scott J. Emrich; Douglas Thain (CCGRID, 2014)

Confuga: Scalable Data Intensive Computing for POSIX Workflows. - Patrick Donnelly; Nicholas L. Hazekamp; Douglas Thain (CCGRID, 2015)

Balancing Thread-Level and Task-Level Parallelism for Data-Intensive Workloads on Clusters and Clouds. - Olivia Choudhury; Dinesh Rajan; Nicholas L. Hazekamp; Sandra Gesing; Douglas Thain; Scott J. Emrich (CLUSTER, 2015)

Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow. - Nicholas L. Hazekamp; Joseph Sarro; Olivia Choudhury; Sandra Gesing; Scott J. Emrich; Douglas Thain (e-Science, 2015)

Accelerating Comparative Genomics Work ows in a Distributed Environment with Optimized Data Partitioning and Workflow Fusion. - Olivia Choudhury; Nicholas L. Hazekamp; Douglas Thain; Scott J. Emrich (Scalable Comput. Pract. Exp., 2015)

Mining the Clinical Narrative: All Text are Not Equal. - Keith Feldman; Nicholas L. Hazekamp; Nitesh V. Chawla (ICHI, 2016)

An Algebra for Robust Workflow Transformations. - Nicholas L. Hazekamp; Douglas Thain (eScience, 2018)

MAKER as a Service: Moving HPC Applications to Jetstream Cloud. - Nicholas L. Hazekamp; Upendra Kumar Devisetty; Nirav C. Merchant; Douglas Thain (IC2E, 2018)

Automatic Dependency Management for Scientific Applications on Clusters. - Benjamín Tovar; Nicholas L. Hazekamp; Nathaniel Kremer-Herman; Douglas Thain (IC2E, 2018)

Combining Static and Dynamic Storage Management for Data Intensive Scientific Workflows. - Nicholas L. Hazekamp; Nathaniel Kremer-Herman; Benjamín Tovar; Haiyan Meng; Olivia Choudhury; Scott J. Emrich; Douglas Thain (IEEE Trans. Parallel Distributed Syst., 2018)

Dynamic Sizing of Continuously Divisible Jobs for Heterogeneous Resources. - Nicholas L. Hazekamp; Benjamín Tovar; Douglas Thain (eScience, 2019)

Solving the Container Explosion Problem for Distributed High Throughput Computing. - Tim Shaffer; Nicholas L. Hazekamp; Jakob Blomer; Douglas Thain (IPDPS, 2020)