Software news and updates carma: A molecular dynamics analysis program. - Nicholas M. Glykos (J. Comput. Chem., 2006)

Reconstruction of DNA sequences using genetic algorithms and cellular automata: Towards mutation prediction? - Ch. Mizas; Georgios Ch. Sirakoulis; Vasilios A. Mardiris; Ioannis Karafyllidis; Nicholas M. Glykos; R. Sandaltzopoulos (Biosyst., 2008)

Pinda: A Web service for detection and analysis of intraspecies gene duplication events. - Dimitrios-Georgios Kontopoulos; Nicholas M. Glykos (Comput. Methods Programs Biomed., 2013)

Grcarma: A fully automated task-oriented interface for the analysis of molecular dynamics trajectories. - Panagiotis I. Koukos; Nicholas M. Glykos (J. Comput. Chem., 2013)

On the Application of Good-Turing Statistics to Quantify Convergence of Biomolecular Simulations. - Panagiotis I. Koukos; Nicholas M. Glykos (J. Chem. Inf. Model., 2014)

Sensitivity of Folding Molecular Dynamics Simulations to Even Minor Force Field Changes. - Athanasia-Panagiota Serafeim; Georgios Salamanos; Kalliopi K. Patapati; Nicholas M. Glykos (J. Chem. Inf. Model., 2016)

The balance between side-chain and backbone-driven association in folding of the α-helical influenza A transmembrane peptide. - Ioannis Stylianakis; Ariella Shalev; Steve Scheiner; Michael P. Sigalas; Isaiah T. Arkin; Nicholas M. Glykos; Antonios Kolocouris (J. Comput. Chem., 2020)

Folding molecular dynamics simulation of T-peptide, a HIV viral entry inhibitor: Structure, dynamics, and comparison with the experimental data. - Ioanna Gkogka; Nicholas M. Glykos (J. Comput. Chem., 2022)

The Curious Case of A31P, a Topology-Switching Mutant of the Repressor of Primer Protein: A Molecular Dynamics Study of Its Folding and Misfolding. - Olympia-Dialekti Vouzina; Alexandros Tafanidis; Nicholas M. Glykos (J. Chem. Inf. Model., 2024)