Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Ion I. Mandoiu; Alexander Zelikovsky (BIBM Workshops, 2011)

EDR2: A sink failure resilient approach for WSNs. - Marco Valero; Mingsen Xu; Nicholas Mancuso; Wen-Zhan Song 001; Raheem A. Beyah (ICC, 2012)

Workshop: A maximum likelihood method for quasispecies spectrum assembly. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Lilia Ganova-Raeva; Ion I. Mandoiu; Alexander Zelikovsky (ICCABS, 2012)

Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data. - Rachel J. O'Neill; Ion I. Mandoiu; Mazhar I. Khan; Craig Obergfell; Hongjun Wang; Andrew Bligh; Bassam Tork; Nicholas Mancuso; Alexander Zelikovsky (ICCABS, 2012)

Reconstructing viral quasispecies from NGS amplicon reads. - Nicholas Mancuso; Bassam Tork; Pavel Skums; Lilia Ganova-Raeva; Ion I. Mandoiu; Alex Zelikovsky (Silico Biol., 2012)

kGEM: An EM-based algorithm for local reconstruction of viral quasispecies. - Alexander Artyomenko; Nicholas Mancuso; Alex Zelikovsky; Pavel Skums; Ion I. Mandoiu (ICCABS, 2013)

Estimation of viral population structure from amplicon-based reads. - Nicholas Mancuso; Alexander Artyomenko; Alex Zelikovsky; Pavel Skums; Ion I. Mandoiu (ICCABS, 2013)

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows. - Pavel Skums; Nicholas Mancuso; Alexander Artyomenko; Bassam Tork; Ion I. Mandoiu; Yuri Khudyakov; Alex Zelikovsky (BMC Bioinform., 2013)

VGA: A method for viral quasispecies assembly from ultra-deep sequencing data. - Serghei Mangul; Nicholas C. Wu; Nicholas Mancuso; Alex Zelikovsky; Ren Sun; Eleazar Eskin (ICCABS, 2014)

Accurate viral population assembly from ultra-deep sequencing data. - Serghei Mangul; Nicholas C. Wu; Nicholas Mancuso; Alex Zelikovsky; Ren Sun; Eleazar Eskin (Bioinform., 2014)

Enhanced methods to detect haplotypic effects on gene expression. - Robert Brown; Gleb Kichaev; Nicholas Mancuso; James Boocock; Bogdan Pasaniuc (Bioinform., 2017)

Integrative Analyses Identify Susceptibility Genes Underlying COVID-19 Hospitalization. - Kritika Singh; Gita Pathak; Tyne Miller-Flemming; Frank Wendt; Nava Ehsan; Kangcheng Hou; Ruth Johnson; Zeyun Lu; Shyamalika Gopalan; Loic Yang; Pejman Mohammadi 001; Bogdan Pasaniuc; et al. (AMIA, 2021)

twas_sim, a Python-based tool for simulation and power analysis of transcriptome-wide association analysis. - Xinran Wang; Zeyun Lu; Arjun Bhattacharya; Bogdan Pasaniuc; Nicholas Mancuso (Bioinform., 2023)