Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity. - Thomas B. K. Watkins; Emma C. Colliver; Matthew R. Huska; Tom L. Kaufmann; Emilia L. Lim; Cody B. Duncan; Kerstin Haase; Peter Van Loo; Charles Swanton; Nicholas McGranahan; Roland F. Schwarz (PLoS Comput. Biol., 2023)

Characterizing the Solution Space of Migration Histories of Metastatic Cancers with MACH2. - Mrinmoy Saha Roddur; Vikram Ramavarapu; Abigail Bunkum; Ariana Huebner; Roman Mineyev; Nicholas McGranahan; Simone Zaccaria; Mohammed El-Kebir (RECOMB, 2025)