PROBER: oligonucleotide FISH probe design software. - Nicholas Navin; Vladimir Grubor; Jim Hicks; Evan Leibu; Elizabeth Thomas; Jennifer Troge; Michael Riggs; Pär Lundin; Susanne Månér; Jonathan Sebat; Anders Zetterberg; Michael Wigler (Bioinform., 2006)

SCMarker: Ab initio marker selection for single cell transcriptome profiling. - Fang Wang 020; Shaoheng Liang; Tapsi Kumar; Nicholas Navin; Ken Chen 001 (PLoS Comput. Biol., 2019)

Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data. - Xian F. Mallory; Mohammad Amin Edrisi; Nicholas Navin; Luay Nakhleh (PLoS Comput. Biol., 2020)