Knowledge-Based Avoidance of Drug-Resistant HIV Mutants. - Richard H. Lathrop; Nicholas R. Steffen; Miriam P. Raphael; Sophia Deeds-Rubin; Michael J. Pazzani; Paul J. Cimoch; Darryl M. See; Jeremiah G. Tilles (AI Mag., 1999)

DNA sequence and structure: direct and indirect recognition in protein-DNA binding. - Nicholas R. Steffen; S. D. Murphy; L. Tolleri; G. Wesley Hatfield; Richard H. Lathrop (ISMB, 2002)

DNA Deformation Energy as an Indirect Recognition Mechanism in Protein-DNA Interactions. - Kimberly A. Aeling; Nicholas R. Steffen; Matthew Johnson 009; G. Wesley Hatfield; Richard H. Lathrop; Donald F. Senear (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)