The Performance of Transversion Based Distance Estimates. - Michael Schöniger; Nick Goldman (German Conference on Bioinformatics, 1996)

EDIBLE: experimental design and information calculations in phylogenetics. - Tim Massingham; Nick Goldman (Bioinform., 2000)

Pandit: a database of protein and associated nucleotide domains with inferred trees. - Simon Whelan; Paul I. W. de Bakker; Nick Goldman (Bioinform., 2003)

XRate: a fast prototyping, training and annotation tool for phylo-grammars. - Peter S. Klosterman; Andrew V. Uzilov; Yuri R. Bendaña; Robert K. Bradley; Sharon Chao; Carolin Kosiol; Nick Goldman; Ian H. Holmes (BMC Bioinform., 2006)

PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. - Simon Whelan; Paul I. W. de Bakker; Emmanuel Quevillon; Nicolas Rodriguez 001; Nick Goldman (Nucleic Acids Res., 2006)

Determination and validation of principal gene products. - Michael L. Tress; Jan-Jaap Wesselink; Adam Frankish; Gonzalo López; Nick Goldman; Ari Löytynoja; Tim Massingham; Fabio Pardi; Simon Whelan; Jennifer L. Harrow; Alfonso Valencia (Bioinform., 2008)

Genomic DNA k-mer Spectra: Models and Modalities. - Benny Chor; David Horn 001; Nick Goldman; Yaron Levy; Tim Massingham (RECOMB, 2010)

webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser. - Ari Löytynoja; Nick Goldman (BMC Bioinform., 2010)

PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment. - Botond Sipos; Tim Massingham; Gregory E. Jordan; Nick Goldman (BMC Bioinform., 2011)

Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm. - Ari Löytynoja; Albert J. Vilella; Nick Goldman (Bioinform., 2012)

Error-correcting properties of the SOLiD Exact Call Chemistry. - Tim Massingham; Nick Goldman (BMC Bioinform., 2012)

Towards practical, high-capacity, low-maintenance information storage in synthesized DNA. - Nick Goldman; Paul Bertone; Siyuan Chen; Christophe Dessimoz; Emily M. LeProust; Botond Sipos; Ewan Birney (Nat., 2013)

Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset. - Tjaart A. P. de Beer; Roman A. Laskowski; Sarah L. Parks; Botond Sipos; Nick Goldman; Janet M. Thornton (PLoS Comput. Biol., 2013)

Phylogenetic Quantification of Intra-tumour Heterogeneity. - Roland F. Schwarz; Anne Trinh; Botond Sipos; James D. Brenton; Nick Goldman; Florian Markowetz (PLoS Comput. Biol., 2014)

Music of the Spheres. - Charlotte Jarvis; Nick Goldman (EVA, 2015)

A phylogenetic approach for weighting genetic sequences. - Nicola De Maio; Alexander V. Alekseyenko; William J. Coleman-Smith; Fabio Pardi; Marc A. Suchard; Asif U. Tamuri; Jakub Truszkowski; Nick Goldman (BMC Bioinform., 2021)

Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk. - Antanas Kalkauskas; Umberto Perron; Yuxuan Sun; Nick Goldman; Guy Baele; Stéphane Guindon; Nicola De Maio (PLoS Comput. Biol., 2021)

phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets. - Nicola De Maio; William R. Boulton; Lukas Weilguny; Conor R. Walker; Yatish Turakhia; Russell Corbett-Detig; Nick Goldman (PLoS Comput. Biol., 2022)