Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine. - Niclas Thomas; James M. Heather; Wilfred Ndifon; John Shawe-Taylor; Benjamin Chain (Bioinform., 2013)

Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence. - Niclas Thomas; Katharine Best; Mattia Cinelli; Shlomit Reich-Zeliger; Hilah Gal; Eric Shifrut; Asaf Madi; Nir Friedman; John Shawe-Taylor; Benny Chain (Bioinform., 2014)