MASCOT: parameter and state inference under the marginal structured coalescent approximation. - Nicola F. Müller; David A. Rasmussen; Tanja Stadler (Bioinform., 2018)

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. - Remco R. Bouckaert; Timothy G. Vaughan; Joëlle Barido-Sottani; Sebastián Duchêne; Mathieu Fourment; Alexandra Gavryushkina; Joseph Heled; Graham Jones; Denise Kühnert; Nicola De Maio; Michael Matschiner; Fábio K. Mendes; et al. (PLoS Comput. Biol., 2019)

Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration. - Jing Yang; Nicola F. Müller; Remco R. Bouckaert; Bing Xu 001; Alexei J. Drummond (PLoS Comput. Biol., 2019)

Understanding epidemiological and macroevolutionary processes using novel phylogenetic and phylodynamic methods. - Nicola F. Müller (2019)