A Kalman Filter Based Background Updating Algorithm Robust to Sharp Illumination Changes. - Stefano Messelodi; Carla Maria Modena; Nicola Segata; Michele Zanin (ICIAP, 2005)

Towards the integration of computational systems biology and high-throughput data: supporting differential analysis of microarray gene expression data. - Nicola Segata; Enrico Blanzieri; Corrado Priami (J. Integr. Bioinform., 2008)

Stochastic pi-Calculus Modelling of Multisite Phosphorylation Based Signaling: The PHO Pathway in Saccharomyces Cerevisiae. - Nicola Segata; Enrico Blanzieri (Trans. Comp. Sys. Biology, 2008)

A Scalable Noise Reduction Technique for Large Case-Based Systems. - Nicola Segata; Enrico Blanzieri; Padraig Cunningham (ICCBR, 2009)

Fast Local Support Vector Machines for Large Datasets. - Nicola Segata; Enrico Blanzieri (MLDM, 2009)

Local Approaches for Fast, Scalable and Accurate Learning with Kernels. - Nicola Segata (2009)

Keyphrases Extraction from Scientific Documents: Improving Machine Learning Approaches with Natural Language Processing. - Mikalai Krapivin; Aliaksandr Autayeu; Maurizio Marchese; Enrico Blanzieri; Nicola Segata (ICADL, 2010)

Noise reduction for instance-based learning with a local maximal margin approach. - Nicola Segata; Enrico Blanzieri; Sarah Jane Delany; Padraig Cunningham (J. Intell. Inf. Syst., 2010)

Fast and Scalable Local Kernel Machines. - Nicola Segata; Enrico Blanzieri (J. Mach. Learn. Res., 2010)

Operators for transforming kernels into quasi-local kernels that improve SVM accuracy. - Nicola Segata; Enrico Blanzieri (J. Intell. Inf. Syst., 2011)

Profiling instances in noise reduction. - Sarah Jane Delany; Nicola Segata; Brian Mac Namee (Knowl. Based Syst., 2012)

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. - Sahar Abubucker; Nicola Segata; Johannes Goll; Alyxandria M. Schubert; Jacques Izard; Brandi L. Cantarel; Beltran Rodriguez-Mueller; Jeremy Zucker; Mathangi Thiagarajan; Bernard Henrissat; Owen White; Scott T. Kelley; et al. (PLoS Comput. Biol., 2012)

Microbial Co-occurrence Relationships in the Human Microbiome. - Karoline Faust; Jarupon Fah Sathirapongsasuti; Jacques Izard; Nicola Segata; Dirk Gevers; Jeroen Raes; Curtis Huttenhower (PLoS Comput. Biol., 2012)

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets. - Omry Koren; Dan Knight; Antonio González; Levi Waldron; Nicola Segata; Rob Knight 001; Curtis Huttenhower; Ruth E. Ley (PLoS Comput. Biol., 2013)

MetaRef: a pan-genomic database for comparative and community microbial genomics. - Katherine Huang; Arthur Brady; Anup Mahurkar; Owen White; Dirk Gevers; Curtis Huttenhower; Nicola Segata (Nucleic Acids Res., 2014)

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED. - James Kaminski; Molly K. Gibson; Eric A. Franzosa; Nicola Segata; Gautam Dantas; Curtis Huttenhower (PLoS Comput. Biol., 2015)

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights. - Edoardo Pasolli; Duy Tin Truong; Faizan Malik; Levi Waldron; Nicola Segata (PLoS Comput. Biol., 2016)

bioBakery: a meta'omic analysis environment. - Lauren J. McIver; Galeb Abu-Ali; Eric A. Franzosa; Randall Schwager; Xochitl C. Morgan; Levi Waldron; Nicola Segata; Curtis Huttenhower (Bioinform., 2018)

Discovering and exploring the hidden diversity of the human gut viruses using highly enriched virome samples. - Moreno Zolfo; Andrea Silverj; Aitor Blanco-Míguez; Paolo Manghi; Omar Rota Stabelli; Vitor Heidrich; Jordan Jensen; Sagun Maharjan; Eric A. Franzosa; Cristina Menni; Alessia Visconti; Federica Pinto; et al. (Zenodo, 2024)