LimeSeg: a coarse-grained lipid membrane simulation for 3D image segmentation. - Sarah Machado; Vincent Mercier; Nicolas Chiaruttini (BMC Bioinform., 2019)

DEVILS: a tool for the visualization of large datasets with a high dynamic range. - Romain Guiet; Olivier Burri; Nicolas Chiaruttini; Olivier Hagens; Arne Seitz (F1000Research, 2020)

BigDataProcessor2: a free and open-source Fiji plugin for inspection and processing of TB sized image data. - Christian Tischer 001; Ashis Ravindran; Sabine Reither; Nicolas Chiaruttini; Rainer Pepperkok; Nils Norlin (Bioinform., 2021)

An Open-Source Whole Slide Image Registration Workflow at Cellular Precision Using Fiji, QuPath and Elastix. - Nicolas Chiaruttini; Olivier Burri; Peter Haub; Romain Guiet; Jessica Sordet-Dessimoz; Arne Seitz (Frontiers Comput. Sci., 2021)