FACT - a framework for the functional interpretation of high-throughput experiments. - Felix Kokocinski; Nicolas Delhomme; Gunnar Wrobel; Lars Hummerich; Grischa Toedt; Peter Lichter (BMC Bioinform., 2005)

easyRNASeq: a bioconductor package for processing RNA-Seq data. - Nicolas Delhomme; Ismaël Padioleau; Eileen E. M. Furlong; Lars M. Steinmetz (Bioinform., 2012)

Integrative and Comparative Analysis of Retinoblastoma and Osteosarcoma - Nicolas Delhomme (2013)

Training in High-Throughput Sequencing: Common Guidelines to Enable Material Sharing, Dissemination, and Reusability. - Bastian Schiffthaler; Myrto Kostadima; NGS Trainer Consortium; Nicolas Delhomme; Gabriella Rustici (PLoS Comput. Biol., 2016)

ProkSeq for complete analysis of RNA-Seq data from prokaryotes. - A. K. M. Firoj Mahmud; Nicolas Delhomme; Soumyadeep Nandi; Maria Fällman (Bioinform., 2021)

qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE). - Nanette Christie; Chanaka Mannapperuma; Raphael Ployet; Karen van der Merwe; Niklas Mähler; Nicolas Delhomme; Sanushka Naidoo; Eshchar Mizrachi; Nathaniel Street; Alexander A. Myburg (BMC Bioinform., 2021)