SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. - Nicolas Galtier; Manolo Gouy; Christian Gautier (Comput. Appl. Biosci., 1996)

BAOBAB: a Java editor for large phylogenetic trees. - Julien Dutheil; Nicolas Galtier (Bioinform., 2002)

Markov-Modulated Markov Chains and the Covarion Process of Molecular Evolution. - Nicolas Galtier; Alain Jean-Marie (J. Comput. Biol., 2004)

Polymorphix: a sequence polymorphism database. - Eric Bazin; Laurent Duret; Simon Penel; Nicolas Galtier (Nucleic Acids Res., 2005)

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics. - Julien Dutheil; Sylvain Gaillard; Eric Bazin; Sylvain Glemin; Vincent Ranwez; Nicolas Galtier; Khalid Belkhir (BMC Bioinform., 2006)

Likelihood calculation in molecular phylogenetics. - David Bryant; Nicolas Galtier; Marie-Anne Poursat (Mathematics of Evolution and Phylogeny, 2007)

Evolutionary Modeling of Rate Shifts Reveals Specificity Determinants in HIV-1 Subtypes. - Osnat Penn; Adi Stern; Nimrod D. Rubinstein; Julien Dutheil; Eran Bacharach; Nicolas Galtier; Tal Pupko (PLoS Comput. Biol., 2008)

Sinaps: A Python library to simulate voltage dynamics and ionic electrodiffusion in neurons. - Nicolas Galtier; Claire Guerrier (J. Open Source Softw., 2022)

An Algorithm Based on a Cable-Nernst Planck Model Predicting Synaptic Activity throughout the Dendritic Arbor with Micron Specificity. - Claire Guerrier; Tristan Dellazizzo Toth; Nicolas Galtier; Kurt Haas (Neuroinformatics, 2023)