Experiments in cross-language medical information retrieval using a mixing translation module. - Tuan Due Tran; Nicolas Garcelon; Anita Burgun; Pierre Le Beux (MedInfo, 2004)

Evidence in pharmacovigilance: extracting Adverse Drug Reactions articles from MEDLINE to link them to case databases. - Nicolas Garcelon; Fleur Mougin; Cédric Bousquet; Anita Burgun (MIE, 2006)

Doc'UMVF: Two search tools to provide quality-controlled teaching resources in French to students and teachers. - Marc Cuggia; Stéfan Jacques Darmoni; Nicolas Garcelon; Lina Fatima Soualmia; Annabel Bourde (Int. J. Medical Informatics, 2007)

An Internet supported workflow for the publication process in UMVF (French Virtual Medical University). - Jean-Marie Renard; Annabel Bourde; Marc Cuggia; Nicolas Garcelon; Nathalie Souf; Stéfan Jacques Darmoni; Régis Beuscart; Jean-Marc Brunetaud (Int. J. Medical Informatics, 2007)

A full-text information retrieval system for an epidemiological registry. - Marc Cuggia; Sahar Bayat; Nicolas Garcelon; Lauren Sanders; Florence Rouget; Arnaud Coursin; Patrick Pladys (MedInfo, 2010)

Roogle: An Information Retrieval Engine for Clinical Data Warehouse. - Marc Cuggia; Nicolas Garcelon; Boris Campillo-Gimenez; Thomas Bernicot; Jean-François Laurent; Etienne Garin; André Happe; Régis Duvauferrier (MIE, 2011)

Towards complex queries on data from complex patients. - Gayo Diallo; Natalia Grabar; Frantz Thiessard; Nicolas Garcelon; Julien Grosjean; Marie Dupuch; Suzanne Bento-Pereira; Bruno Frandji; Stéfan Jacques Darmoni; Marc Cuggia (AMIA, 2012)

RAVEL: Retrieval And Visualization in ELectronic health records. - Frantz Thiessard; Fleur Mougin; Gayo Diallo; Vianney Jouhet; Sébastien Cossin; Nicolas Garcelon; Boris Campillo-Gimenez; Wassim Jouini; Julien Grosjean; Philippe Massari; Nicolas Griffon; Marie Dupuch; et al. (MIE, 2012)

Full-text Automated Detection of Surgical Site Infections Secondary to Neurosurgery in Rennes, France. - Boris Campillo-Gimenez; Nicolas Garcelon; Pascal Jarno; Jean Marc Chapplain; Marc Cuggia (MedInfo, 2013)

Enrichissement sémantique associé à la détection de la négation et des antécédents familiaux dans un entrepôt de données hospitalier. - Nicolas Garcelon; Rémi Salomon; Anita Burgun (JFIM, 2014)

Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse. - Nicolas Garcelon; Antoine Neuraz; Vincent Benoit; Rémi Salomon; Anita Burgun (J. Am. Medical Informatics Assoc., 2017)

Finding patients using similarity measures in a rare diseases-oriented clinical data warehouse: Dr. Warehouse and the needle in the needle stack. - Nicolas Garcelon; Antoine Neuraz; Vincent Benoit; Rémi Salomon; Sven Kracker; Felipe Suarez; Nadia Bahi-Buisson; Smail Hadj-Rabia; Alain Fischer; Arnold Munnich; Anita Burgun (J. Biomed. Informatics, 2017)

Problématique des entrepôts de données textuelles: dr Warehouse et la recherche translationnelle sur les maladies rares. (Textual data Warehouse challenge: Dr. Warehouse and translational research on rare diseases). - Nicolas Garcelon (2017)

A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse. - Nicolas Garcelon; Antoine Neuraz; Rémi Salomon; Hassan Faour; Vincent Benoit; Arthur Delapalme; Arnold Munnich; Anita Burgun; Bastien Rance (J. Biomed. Informatics, 2018)

Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task? - Antoine Neuraz; Vincent Looten; Bastien Rance; Nicolas Daniel; Nicolas Garcelon; Leonardo Campillos-Llanos; Anita Burgun; Sophie Rosset (MedInfo, 2019)

Phenotypic similarity for rare disease: Ciliopathy diagnoses and subtyping. - Xiaoyi Chen; Nicolas Garcelon; Antoine Neuraz; Katy Billot; Marc Lelarge; Thomas Bonald; Hugo Garcia; Yoann Martin; Vincent Benoit; Marc Vincent; Hassan Faour; Maxime Douillet; et al. (J. Biomed. Informatics, 2019)

The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding. - Antoine Neuraz; Bastien Rance; Nicolas Garcelon; Leonardo Campillos-Llanos; Anita Burgun; Sophie Rosset (MIE, 2020)

A Multi-Omics Common Data Model for Primary Immunodeficiencies. - Mélanie Buy; William Digan; Xiaoyi Chen; Julien Husson; Mickael Ménager; Frédéric Rieux-Laucat; Nicolas Garcelon (MedInfo, 2021)

Using Deep Learning to Improve Phenotyping from Clinical Reports. - Marc Vincent; Maxime Douillet; Ivan Lerner; Antoine Neuraz; Anita Burgun; Nicolas Garcelon (MedInfo, 2021)

Identification of Similar Patients Through Medical Concept Embedding from Electronic Health Records: A Feasibility Study for Rare Disease Diagnosis. - Xiaoyi Chen; Carole Faviez; Marc Vincent; Nicolas Garcelon; Sophie Saunier; Anita Burgun (MIE, 2021)

An analogy based framework for patient-stay identification in healthcare. - Safa Alsaidi; Miguel Couceiro; Esteban Marquer; Sophie Quennelle; Anita Burgun; Nicolas Garcelon; Adrien Coulet (ICCBR Workshops, 2022)

Exploring Analogical Inference in Healthcare. - Safa Alsaidi; Miguel Couceiro; Sophie Quennelle; Anita Burgun; Nicolas Garcelon; Adrien Coulet (IARML@IJCAI, 2022)

Enriching UMLS-Based Phenotyping of Rare Diseases Using Deep-Learning: Evaluation on Jeune Syndrome. - Carole Faviez; Marc Vincent; Nicolas Garcelon; Caroline Michot; Geneviève Baujat; Valerie Cormier-Daire; Sophie Saunier; Xiaoyi Chen; Anita Burgun (MIE, 2022)

Improving Patient Similarity Using Different Modalities of Phenotypes Extracted from Clinical Narratives. - Xiaoyi Chen; Carole Faviez; Marc Vincent; Sophie Saunier; Nicolas Garcelon; Anita Burgun (MIE, 2023)

The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. - Sophie Quennelle; Maxime Douillet; Lisa Friedlander; Olivia Boyer; Antoine Neuraz; Anita Burgun; Nicolas Garcelon (MIE, 2023)

An Integrated Pipeline for Phenotypic Characterization, Clustering and Visualization of Patient Cohorts in a Rare Disease-Oriented Clinical Data Warehouse. - Xiaoyi Chen; Junyuan Wang; Carole Faviez; Xiaomeng Wang; Marc Vincent; Rosy Tsopra; Anita Burgun; Nicolas Garcelon (MIE, 2024)

Facilitating phenotyping from clinical texts: the medkit library. - Antoine Neuraz; Ghislain Vaillant; Camila Arias; Olivier Birot; Kim Tâm Huynh; Thibaut Fabacher; Alice Rogier; Nicolas Garcelon; Ivan Lerner; Bastien Rance; Adrien Coulet (CoRR, 2024)

Objectivizing issues in the diagnosis of complex rare diseases: lessons learned from testing existing diagnosis support systems on ciliopathies. - Carole Faviez; Xiaoyi Chen; Nicolas Garcelon; Mohamad Zaidan; Katy Billot; Friederike Petzold; Hassan Faour; Maxime Douillet; Jean-Michel Rozet; Valerie Cormier-Daire; Tania Attié-Bitach; Stanislas Lyonnet; et al. (BMC Medical Informatics Decis. Mak., 2024)

Enhancing rare disease detection with deep phenotyping from EHR narratives: evaluation on Jeune syndrome. - Carole Faviez; Xiaomeng Wang; Marc Vincent; Nicolas Garcelon; Sophie Saunier; Valerie Cormier-Daire; Xiaoyi Chen; Anita Burgun (Int. J. Medical Informatics, 2025)

Active learning for extracting rare adverse events from electronic health records: A study in pediatric cardiology. - Sophie Quennelle; Sophie Malekzadeh-Milani; Nicolas Garcelon; Hassan Faour; Anita Burgun; Carole Faviez; Rosy Tsopra; Damien Bonnet; Antoine Neuraz (Int. J. Medical Informatics, 2025)

Comparing representations of long clinical texts for the task of patient note-identification. - Safa Alsaidi; Marc Vincent; Olivia Boyer; Nicolas Garcelon; Miguel Couceiro; Adrien Coulet (CoRR, 2025)