SWISS-MODEL: an automated protein homology-modeling server. - Torsten Schwede; Jürgen Kopp; Nicolas Guex; Manuel C. Peitsch (Nucleic Acids Res., 2003)

Defining and searching for structural motifs using DeepView/Swiss-PdbViewer. - Maria U. Johansson; Vincent Zoete; Olivier Michielin; Nicolas Guex (BMC Bioinform., 2012)

Density-based hierarchical clustering of pyro-sequences on a large scale - the case of fungal ITS1. - Marco Pagni; Hélène Niculita-Hirzel; Loïc Pellissier; Anne Dubuis; Ioannis Xenarios; Antoine Guisan; Ian R. Sanders; Jérôme Goudet; Nicolas Guex (Bioinform., 2013)

Angiogenic Activity of Breast Cancer Patients' Monocytes Reverted by Combined Use of Systems Modeling and Experimental Approaches. - Nicolas Guex; Isaac Crespo; Sylvian Bron; Assia Ifticene-Treboux; Eveline Faes-van't Hull; Solange Kharoubi; Robin Liechti; Patricia Werffeli; Mark Ibberson; Francois Majo; Michäel Nicolas; Julien Laurent; et al. (PLoS Comput. Biol., 2015)

Genomic Data Clustering on FPGAs for Compression. - Enrico Petraglio; Rick Wertenbroek; Flavio Capitao; Nicolas Guex; Christian Iseli; Yann Thoma (ARC, 2017)

Towards in the Field Fast Pathogens Detection Using FPGAs. - Simone Casale Brunet; Thierry Schüpbach; Nicolas Guex; Christian Iseli; Alan J. Bridge; Dmitry Kuznetsov; Christian J. A. Sigrist; Phillippe Lemercier; Ioannis Xenarios; Endri Bezati (FPL, 2018)

PamgeneAnalyzeR: open and reproducible pipeline for kinase profiling. - Amel Bekkar; Anita Nasrallah; Nicolas Guex; Lluis Fajas; Ioannis Xenarios; Isabel C. Lopez-Mejia (Bioinform., 2020)

SPICA: Swiss portal for immune cell analysis. - Massimo Andreatta; Fabrice P. A. David; Christian Iseli; Nicolas Guex; Santiago J. Carmona (Nucleic Acids Res., 2022)