Mobyle: a new full web bioinformatics framework. - Bertrand Néron; Hervé Ménager; Corinne Maufrais; Nicolas Joly; Julien Maupetit; Sébastien Letort; Sébastien Carrère; Pierre Tufféry; Catherine Letondal (Bioinform., 2009)

Towards a Change Impact Analysis Model for Java Programs: An Empirical Evaluation. - Linda Badri; Mourad Badri; Nicolas Joly (J. Softw., 2015)

Generation of Non-Classical States of Light Using Photonics Crystal Fibres. - Nicolas Joly (ECOC, 2018)

QUARTIC: QUick pArallel algoRithms for high-Throughput sequencIng data proCessing. - Frédéric Jarlier; Nicolas Joly; Nicolas Fedy; Thomas Magalhaes; Leonor Sirotti; Paul Paganiban; Firmin Martin; Michael McManus; Philippe Hupé (F1000Research, 2020)

ROCK: digital normalization of whole genome sequencing data. - Véronique Legrand; Thomas Kergrohen; Nicolas Joly; Alexis Criscuolo (J. Open Source Softw., 2022)