Cascade: a R package to study, predict and simulate the diffusion of a signal through a temporal gene network. - Nicolas Jung; Frédéric Bertrand; Seiamak Bahram; Laurent Vallat; Myriam Maumy-Bertrand (Bioinform., 2014)

A High-Performance Sequence Analysis Engine for Shotgun Metagenomics through GPU Acceleration. - Ying-Feng Hsu; Morito Matsuoka; Nicolas Jung; Yuki Matsumoto; Daisuke Motooka; Shota Nakamura (BIBE, 2018)

Deep Learning Approach for Pathogen Detection Through Shotgun Metagenomics Sequence Classification. - Ying-Feng Hsu; Makiko Ito; Takumi Maruyama; Morito Matsuoka; Nicolas Jung; Yuki Matsumoto; Daisuke Motooka; Shota Nakamura (AIME, 2019)

High-Performance Virus Detection System by using Deep Learning. - Ying-Feng Hsu; Makiko Ito; Takumi Maruyama; Morito Matsuoka; Nicolas Jung; Yuki Matsumoto; Daisuke Motooka; Shota Nakamura (CEC, 2020)

selectBoost: a general algorithm to enhance the performance of variable selection methods. - Frédéric Bertrand; Ismaïl Aouadi; Nicolas Jung; Raphael Carapito; Laurent Vallat; Seiamak Bahram; Myriam Maumy-Bertrand (Bioinform., 2021)