A maximum likelihood framework for protein design. - Claudia L. Kleinman; Nicolas Rodrigue; Cécile Bonnard; Hervé Philippe; Nicolas Lartillot (BMC Bioinform., 2006)

Conjugate Gibbs Sampling for Bayesian Phylogenetic Models. - Nicolas Lartillot (J. Comput. Biol., 2006)

Empirical profile mixture models for phylogenetic reconstruction. - Si Quang Le; Olivier Gascuel; Nicolas Lartillot (Bioinform., 2008)

Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models. - Nicolas Rodrigue; Hervé Philippe; Nicolas Lartillot (Bioinform., 2008)

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. - Nicolas Lartillot; Thomas Lepage; Samuel Blanquart (Bioinform., 2009)

Monte Carlo algorithms for Brownian phylogenetic models. - Benjamin Horvilleur; Nicolas Lartillot (Bioinform., 2014)

A phylogenetic Kalman filter for ancestral trait reconstruction using molecular data. - Nicolas Lartillot (Bioinform., 2014)

Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package. - Nicolas Rodrigue; Nicolas Lartillot (Bioinform., 2014)