Querying large read collections in main memory: a versatile data structure. - Nicolas Philippe; Mikaël Salson; Thierry Lecroq; Martine Léonard; Therese Commes; Eric Rivals (BMC Bioinform., 2011)

Développement de méthodes et d'algorithmes pour la caractérisation et l'annotation des transcriptomes avec les séquenceurs haut débit. (Development of methods and tools for the characterization and annotation of the transcriptomes with Next-Generation Sequencing technologies). - Nicolas Philippe (2011)

A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections. - Eric Rivals; Nicolas Philippe; Mikaël Salson; Martine Léonard; Therese Commes; Thierry Lecroq (ERCIM News, 2012)

The Role of Machine Learning in Finding Chimeric RNAs. - Sacha Beaumeunier; Jerome Audoux; Anthony Boureux; Therese Commes; Nicolas Philippe; Ronnie Alves (DEXA Workshops, 2015)

SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines. - Jerome Audoux; Mikaël Salson; Christophe F. Grosset; Sacha Beaumeunier; Jean-Marc Holder; Therese Commes; Nicolas Philippe (BMC Bioinform., 2017)