A maximum likelihood framework for protein design. - Claudia L. Kleinman; Nicolas Rodrigue; Cécile Bonnard; Hervé Philippe; Nicolas Lartillot (BMC Bioinform., 2006)

Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models. - Nicolas Rodrigue; Hervé Philippe; Nicolas Lartillot (Bioinform., 2008)

Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package. - Nicolas Rodrigue; Nicolas Lartillot (Bioinform., 2014)

COMPASS: the COMPletely Arbitrary Sequence Simulator. - Andrew Low; Nicolas Rodrigue; Alex Wong 003 (Bioinform., 2017)