gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. - Sébastien Moretti; Riccardo Murri; Sergio Maffioletti; Arnold Kuzniar; Briséïs Castella; Nicolas Salamin; Marc Robinson-Rechavi; Heinz Stockinger (HealthGrid, 2012)

SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model. - Hannes Schabauer; Mario Valle; Christoph Pacher; Heinz Stockinger; Alexandros Stamatakis; Marc Robinson-Rechavi; Ziheng Yang; Nicolas Salamin (IPDPS Workshops, 2012)

Evolutionary footprint of coevolving positions in genes. - Linda Dib; Daniele Silvestro; Nicolas Salamin (Bioinform., 2014)

Optimization strategies for fast detection of positive selection on phylogenetic trees. - Mario Valle; Hannes Schabauer; Christoph Pacher; Heinz Stockinger; Alexandros Stamatakis; Marc Robinson-Rechavi; Nicolas Salamin (Bioinform., 2014)

Selectome update: quality control and computational improvements to a database of positive selection. - Sébastien Moretti; Balazs Laurenczy; Walid H. Gharib; Briséïs Castella; Arnold Kuzniar; Hannes Schabauer; Romain A. Studer; Mario Valle; Nicolas Salamin; Heinz Stockinger; Marc Robinson-Rechavi (Nucleic Acids Res., 2014)

Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree. - Linda Dib; Xavier Meyer; Panu Artimo; Vassilios Ioannidis; Heinz Stockinger; Nicolas Salamin (BMC Bioinform., 2015)

Scheduling Finite Difference Approximations for DAG-Modeled Large Scale Applications. - Xavier Meyer; Bastien Chopard; Nicolas Salamin (PASC, 2017)

State aggregation for fast likelihood computations in molecular evolution. - Iakov I. Davydov; Marc Robinson-Rechavi; Nicolas Salamin (Bioinform., 2017)

Accelerating Bayesian inference for evolutionary biology models. - Xavier Meyer; Bastien Chopard; Nicolas Salamin (Bioinform., 2017)

Polymorphic sites preferentially avoid co-evolving residues in MHC class I proteins. - Linda Dib; Nicolas Salamin; David Gfeller (PLoS Comput. Biol., 2018)

CoevDB: a database of intramolecular coevolution among protein-coding genes of the bony vertebrates. - Xavier Meyer; Linda Dib; Nicolas Salamin (Nucleic Acids Res., 2019)