Detection of new protein domains using co-occurrence: application to Plasmodium falciparum. - Nicolas Terrapon; Olivier Gascuel; Eric Maréchal; Laurent Bréhélin (Bioinform., 2009)

Recherche de domaines protéiques divergents à l'aide de modèles de Markov cachés : application à Plasmodium falciparum. (Seeking divergent protein domains with Hidden Markov Models: application to Plasmodium falciparum). - Nicolas Terrapon (2010)

Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum. - Nicolas Terrapon; Olivier Gascuel; Eric Maréchal; Laurent Bréhélin (BMC Bioinform., 2012)

Protein family analysis at the domain-level. - Nicolas Terrapon; Andrew D. Moore; Erich Bornberg-Bauer (GCB, 2014)

DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins. - Andrew D. Moore; Andreas Held; Nicolas Terrapon; January 3rd Weiner; Erich Bornberg-Bauer (Bioinform., 2014)

Rapid similarity search of proteins using alignments of domain arrangements. - Nicolas Terrapon; January 3rd Weiner; Sonja Grath; Andrew D. Moore; Erich Bornberg-Bauer (Bioinform., 2014)

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species. - Nicolas Terrapon; Vincent Lombard; Harry J. Gilbert; Bernard Henrissat (Bioinform., 2015)

PULDB: the expanded database of Polysaccharide Utilization Loci. - Nicolas Terrapon; Vincent Lombard; Elodie Drula; Pascal Lapébie; Saad Al-Masaudi; Harry J. Gilbert; Bernard Henrissat (Nucleic Acids Res., 2018)

The carbohydrate-active enzyme database: functions and literature. - Elodie Drula; Marie-Line Garron; Suzan Dogan; Vincent Lombard; Bernard Henrissat; Nicolas Terrapon (Nucleic Acids Res., 2022)

An objective criterion to evaluate sequence-similarity networks helps in dividing the protein family sequence space. - Bastian Volker Helmut Hornung; Nicolas Terrapon (PLoS Comput. Biol., 2023)