Systematic component selection for gene-network refinement. - Nicole Radde; Jutta Gebert; Christian V. Forst (Bioinform., 2006)

Bayesian Inference of Gene Regulatory Networks Using Gene Expression Time Series Data. - Nicole Radde; Lars Kaderali (BIRD, 2007)

Modeling gene regulatory networks with piecewise linear differential equations. - Jutta Gebert; Nicole Radde; Gerhard-Wilhelm Weber (Eur. J. Oper. Res., 2007)

Modeling Non-Linear Dynamic Phenomena in Biochemical Networks - Nicole Radde (2007)

The Effect of Time Scale Differences and Time Delays on the Structural Stability of oscillations in a Two-Gene Network. - Nicole Radde (Adv. Complex Syst., 2008)

Inferring Gene Regulatory Networks from Expression Data. - Lars Kaderali; Nicole Radde (Computational Intelligence in Bioinformatics, 2008)

Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model. - Nadav S. Bar; Nicole Radde (BMC Syst. Biol., 2009)

Modeling and simulation of nitrogen regulation in Corynebacterium glutamicum. - Jutta Gebert; Nicole Radde; Ulrich Faigle; Julia Strösser; Andreas Burkovski (Discret. Appl. Math., 2009)

Inference of an oscillating model for the yeast cell cycle. - Nicole Radde; Lars Kaderali (Discret. Appl. Math., 2009)

The Impact of Time Delays on the Robustness of Biological Oscillators and the Effect of Bifurcations on the Inverse Problem. - Nicole Radde (EURASIP J. Bioinform. Syst. Biol., 2009)

Computation of the Posterior Entropy in a Bayesian Framework for Parameter Estimation in Biological Networks. - Andrei Kramer; Jan Hasenauer; Frank Allgöwer; Nicole Radde (CCA, 2010)

Generic Bifurcations in the Dynamics of Biochemical Networks. - Steffen Waldherr; Frank Allgöwer; Nicole Radde (CCA, 2010)

Fixed point characterization of biological networks with complex graph topology. - Nicole Radde (Bioinform., 2010)

Graphical methods for analysing feedback in biological networks - A survey. - Nicole Radde; Nadav S. Bar; Murad Banaji (Int. J. Syst. Sci., 2010)

A maximum likelihood estimator for parameter distributions in heterogeneous cell populations. - Jan Hasenauer; Steffen Waldherr; Nicole Radde; Malgorzata Doszczak; Peter Scheurich; Frank Allgöwer (ICCS, 2010)

Towards experimental design using a Bayesian framework for parameter identification in dynamic intracellular network models. - Andrei Kramer; Nicole Radde (ICCS, 2010)

Identification of models of heterogeneous cell populations from population snapshot data. - Jan Hasenauer; Steffen Waldherr; Malgorzata Doszczak; Nicole Radde; Peter Scheurich; Frank Allgöwer (BMC Bioinform., 2011)

Uncertainty-aware visual analysis of biochemical reaction networks. - Corinna Vehlow; Jan Hasenauer; Andrei Kramer; Julian Heinrich; Nicole Radde; Frank Allgöwer; Daniel Weiskopf (BioVis, 2012)

Trajectory-oriented Bayesian experiment design versus Fisher A-optimal design: an in depth comparison study. - Patrick Weber; Andrei Kramer; Clemens Dingler; Nicole Radde (Bioinform., 2012)

Analyzing fixed points of intracellular regulation networks with interrelated feedback topology. - Nicole Radde (BMC Syst. Biol., 2012)

iVUN: interactive Visualization of Uncertain biochemical reaction Networks. - Corinna Vehlow; Jan Hasenauer; Andrei Kramer; Andreas Raue; Sabine Hug; Jens Timmer; Nicole Radde; Fabian J. Theis; Daniel Weiskopf (BMC Bioinform., 2013)

mcmc_clib-an advanced MCMC sampling package for ode models. - Andrei Kramer; Vassilios Stathopoulos 003; Mark A. Girolami; Nicole Radde (Bioinform., 2014)

Hamiltonian Monte Carlo methods for efficient parameter estimation in steady state dynamical systems. - Andrei Kramer; Ben Calderhead; Nicole Radde (BMC Bioinform., 2014)

A computational model of PKD and CERT interactions at the trans-Golgi network of mammalian cells. - Patrick Weber; Mariana Hornjik; Monilola A. Olayioye; Angelika Hausser; Nicole Radde (BMC Syst. Biol., 2015)

MEMO: multi-experiment mixture model analysis of censored data. - Eva-Maria Geissen; Jan Hasenauer; Stephanie Heinrich; Silke Hauf; Fabian J. Theis; Nicole Radde (Bioinform., 2016)

Sampling-based Bayesian approaches reveal the importance of quasi-bistable behavior in cellular decision processes on the example of the MAPK signaling pathway in PC-12 cell lines. - Antje Jensch; Caterina Thomaseth; Nicole Radde (BMC Syst. Biol., 2017)

Quasi-Entropy Closure: a fast and reliable approach to close the moment equations of the Chemical Master Equation. - Vincent Wagner; Benjamin Castellaz; Marco Oesting; Nicole Radde (Bioinform., 2022)

The impossible challenge of estimating non-existent moments of the Chemical Master Equation. - Vincent Wagner; Nicole Radde (Bioinform., 2023)