A promoter model based on different combinations of binding sites. - Niels Grabe; Ralf Hofestädt (German Conference on Bioinformatics, 1998)

Predicting transcription factor binding sites by constructing context specific matrices. - Niels Grabe; Ralf Hofestädt (German Conference on Bioinformatics, 1999)

Molekulare Bioinformatik - Informationsfusion zur Genregulation. - Niels Grabe (GI Jahrestagung, 1999)

AliBaba2: Context specific identification of transcription factor binding sites. - Niels Grabe (Silico Biol., 2000)

Highly specific prediction of phosphorylation sites in proteins. - Matthias Koenig 001; Niels Grabe (Bioinform., 2004)

A multicellular systems biology model predicts epidermal morphology, kinetics and Ca2+ flow. - Niels Grabe; Karsten Neuber (Bioinform., 2005)

Modelling Epidermal Homeostasis as an Approach for Clinical Bioinformatics. - Niels Grabe; Thora Pommerencke; Dennis Müller 005; Simone Huber; Karsten Neuber; Hartmut Dickhaus (MIE, 2006)

Ermittlung von räumlichen Proteinexpressionsmustern mittels Bildverarbeitung. - Thora Pommerencke; Pascal Tomakidi; Hartmut Dickhaus; Niels Grabe (Bildverarbeitung für die Medizin, 2007)

Simulating psoriasis by altering transit amplifying cells. - Niels Grabe; Karsten Neuber (Bioinform., 2007)

Reconstructing protein networks of epithelial differentiation from histological sections. - Niels Grabe; Thora Pommerencke; Thorsten Steinberg; Hartmut Dickhaus; Pascal Tomakidi (Bioinform., 2007)

Nuclear staining and relative distance for quantifying epidermal differentiation in biomarker expression profiling. - Thora Pommerencke; Thorsten Steinberg; Hartmut Dickhaus; Pascal Tomakidi; Niels Grabe (BMC Bioinform., 2008)

Vollautomatische Einzelzellerkennung auf fluoreszenten Gewebeschnitten humaner Epidermis. - Thora Pommerencke; Hartmut Dickhaus; Niels Grabe (Bildverarbeitung für die Medizin, 2009)

Modeling multi-cellular behavior in epidermal tissue homeostasis via finite state machines in multi-agent systems. - Thomas Sütterlin; Simone Huber; Hartmut Dickhaus; Niels Grabe (Bioinform., 2009)

Image-based Quantification of Skin Irritation by Spatial Biomarker Profiling. - Thora Pommerencke; Kathi Westphal; Claudia Ernst; Hartmut Dickhaus; Niels Grabe (Bildverarbeitung für die Medizin, 2010)

Spatial quantification and classification of skin response following perturbation using organotypic skin cultures. - Thora Pommerencke; Kathi Westphal; Claudia Ernst; Kai Safferling; Hartmut Dickhaus; Thorsten Steinberg; Pascal Tomakidi; Niels Grabe (Bioinform., 2010)

Revisiting the Training of Logic Models of Protein Signaling Networks with ASP. - Santiago Videla; Carito Guziolowski; Federica Eduati; Sven Thiele; Niels Grabe; Julio Saez-Rodriguez; Anne Siegel (CMSB, 2012)

Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming - Santiago Videla; Carito Guziolowski; Federica Eduati; Sven Thiele; Niels Grabe; Julio Saez-Rodriguez; Anne Siegel (CoRR, 2012)

Bridging the scales: semantic integration of quantitative SBML in graphical multi-cellular models and simulations with EPISIM and COPASI. - Thomas Sütterlin; Christoph Kolb; Hartmut Dickhaus; Dirk Jäger; Niels Grabe (Bioinform., 2013)

Zooming in: high resolution 3D reconstruction of differently stained histological whole slide images. - Johannes Lotz 002; Judith Berger; Benedikt Müller 001; Kai Breuhahn; Niels Grabe; Stefan Heldmann; André Homeyer; Bernd Lahrmann; Hendrik Laue; Janine Olesch; Michael Schwier; Oliver Sedlaczek; et al. (Digital Pathology, 2014)

CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks. - Aristotelis Kittas; Amélie Barozet; Jekaterina Sereshti; Niels Grabe; Sophia Tsoka (BMC Syst. Biol., 2015)

Automated robust registration of grossly misregistered whole-slide images with varying stains. - Geert Litjens 001; Kai Safferling; Niels Grabe (Digital Pathology, 2016)

Patch-Based Nonlinear Image Registration for Gigapixel Whole Slide Images. - Johannes Lotz 002; Janine Olesch; Benedikt Müller 001; Thomas Polzin; P. Galuschka; J. M. Lotz; Stefan Heldmann; Hendrik Laue; Margarita Gonzalez-Vallinas; Arne Warth; Bernd Lahrmann; Niels Grabe; et al. (IEEE Trans. Biomed. Eng., 2016)

Tumor Cell Load and Heterogeneity Estimation From Diffusion-Weighted MRI Calibrated With Histological Data: an Example From Lung Cancer. - Yi Yin; Oliver Sedlaczek; Benedikt Müller 001; Arne Warth; Margarita Gonzalez-Vallinas; Bernd Lahrmann; Niels Grabe; Hans-Ulrich Kauczor; Kai Breuhahn; Irene E. Vignon-Clementel; Dirk Drasdo (IEEE Trans. Medical Imaging, 2018)

Segmentation of diagnostic tissue compartments on whole slide images with renal thrombotic microangiopathies (TMAs). - Huy Q. Vo; Pietro Antonio Cicalese; Surya Seshan; Syed Asad Rizvi; Aneesh Vathul; Gloria Bueno; Aníbal Pedraza Dorado; Niels Grabe; Katharina Stolle; Francesco Pesce; Joris J. T. H. Roelofs; Jesper Kers; et al. (CoRR, 2023)