Storage of Natural Language Sentences in a Hopfield Network - Nigel Collier (CoRR, 1996)

Convergence Time Characteristics of an Associative Memory for Natural Language Processing. - Nigel Collier (IJCAI, 1997)

Machine Translation versus Dictionary Term Translation - A Comparison for English-Japanese News Article Alignment. - Nigel Collier; Hideki Hirakawa; Akira Kumano (COLING-ACL, 1998)

An Experiment in Hybrid Dictionary and Statistical Sentence Alignment. - Nigel Collier; Kenji Ono; Hideki Hirakawa (COLING-ACL, 1998)

The GENIA project: corpus-based knowledge acquisition and information extraction from genome research papers. - Nigel Collier; Hyun Seok Park; Norihiro Ogata; Yuka Tateishi; Chikashi Nobata; Tomoko Ohta; Tateshi Sekimizu; Hisao Imai; Katsutoshi Ibushi; Jun'ichi Tsujii (EACL, 1999)

A Comparison of Query Translation Methods for English-Japanese Cross-Language Information Retrieval (poster abstract). - Gareth J. F. Jones; Tetsuya Sakai; Nigel Collier; Akira Kumano; Kazuo Sumita (SIGIR, 1999)

Extracting the Names of Genes and Gene Products with a Hidden Markov Model. - Nigel Collier; Chikashi Nobata; Jun'ichi Tsujii (COLING, 2000)

Building an Annotated Corpus in the Molecular-Biology Domain. - Yuka Tateisi; Tomoko Ohta; Nigel Collier; Chikashi Nobata; Jun'ichi Tsujii (SAIC@COLING, 2000)

Machine Learning for Information Extraction from XML marked-up text on the Semantic Web. - Nigel Collier (SemWeb, 2001)

A Framework for Cross-Language Information Access: Application to English and Japanese. - Gareth J. F. Jones; Nigel Collier; Tetsuya Sakai; Kazuo Sumita; Hideki Hirakawa (Comput. Humanit., 2001)

Use of Support Vector Machines in Extended Named Entity Recognition. - Koichi Takeuchi; Nigel Collier (CoNLL, 2002)

PIA-Core: Semantic Annotation through Example-based Learning. - Nigel Collier; Koichi Takeuchi (LREC, 2002)

Progress on Multi-lingual Named Entity Annotation Guidelines using RDF (S). - Nigel Collier; Koichi Takeuchi; Chikashi Nobata; Junichi Fukumoto; Norihiro Ogata (LREC, 2002)

A Framework for Integrating Deep and Shallow Semantic Structures in Text Mining. - Nigel Collier; Koichi Takeuchi; Ai Kawazoe; Tony Mullen; Tuangthong Wattarujeekrit (KES, 2003)

Incorporating topic information into semantic analysis models. - Tony Mullen; Nigel Collier (ACL (Poster and Demonstration), 2004)

Introduction to the Bio-entity Recognition Task at JNLPBA. - Nigel Collier; Jin-Dong Kim (NLPBA/BioNLP, 2004)

Zone Identification in Biology Articles as a Basis for Information Extraction. - Yoko Mizuta; Nigel Collier (NLPBA/BioNLP, 2004)

Sentiment Analysis using Support Vector Machines with Diverse Information Sources. - Tony Mullen; Nigel Collier (EMNLP, 2004)

Annotation of Coreference Relations Among Linguistic Expressions and Images in Biological Articles. - Ai Kawazoe; Asanobu Kitamoto; Nigel Collier (LREC, 2004)

An Annotation Scheme for a Rhetorical Analysis of Biology Articles. - Yoko Mizuta; Nigel Collier (LREC, 2004)

Managing the semantics of coreference relations with Open Ontology Forge. - Ai Kawazoe; Asanobu Kitamoto; Nigel Collier (SemAnnot@ISWC, 2004)

Integrating Event Frame Annotation into the Open Ontology Forge Annotation Tool. - Tuangthong Wattarujeekrit; Nigel Collier (SemAnnot@ISWC, 2004)

PASBio: predicate-argument structures for event extraction in molecular biology. - Tuangthong Wattarujeekrit; Parantu K. Shah; Nigel Collier (BMC Bioinform., 2004)

Comparison of character-level and part of speech features for name recognition in biomedical texts. - Nigel Collier; Koichi Takeuchi (J. Biomed. Informatics, 2004)

A Visual Lexical Model of Caravanserais of Silk Roads, A Tool for Semantic Access to Architectural 3D Data. - Elham Andaroodi; Frédéric Andrès; Nigel Collier; Kinji Ono; Pierre Lebigre (J. Digit. Inf. Manag., 2004)

Towards Semantic Role Labeling & IE in the Medical Literature. - Yacov Kogan; Nigel Collier; Serguei V. S. Pakhomov; Michael Krauthammer (AMIA, 2005)

Exploring Predicate-Argument Relations for Named Entity Recognition in the Molecular Biology Domain. - Tuangthong Wattarujeekrit; Nigel Collier (Discovery Science, 2005)

Bio-medical entity extraction using support vector machines. - Koichi Takeuchi; Nigel Collier (Artif. Intell. Medicine, 2005)

A baseline feature set for learning rhetorical zones using full articles in the biomedical domain. - Tony Mullen; Yoko Mizuta; Nigel Collier (SIGKDD Explor., 2005)

Automatic Classification of Verbs in Biomedical Texts. - Anna Korhonen; Yuval Krymolowski; Nigel Collier (ACL, 2006)

The Development of a Schema for the Annotation of Terms in the Biocaster Disease Detecting/Tracking System. - Ai Kawazoe; Lihua Jin; Mika Shigematsu; Roberto A. Barrero; Kiyosu Taniguchi; Nigel Collier (KR-MED, 2006)

Recent advances in natural language processing for biomedical applications. - Nigel Collier; Adeline Nazarenko; Robert H. Baud; Patrick Ruch (Int. J. Medical Informatics, 2006)

Zone analysis in biology articles as a basis for information extraction. - Yoko Mizuta; Anna Korhonen; Tony Mullen; Nigel Collier (Int. J. Medical Informatics, 2006)

A multilingual ontology for infectious disease surveillance: rationale, design and challenges. - Nigel Collier; Ai Kawazoe; Lihua Jin; Mika Shigematsu; Dinh Dien; Roberto A. Barrero; Koichi Takeuchi; Asanee Kawtrakul (Lang. Resour. Evaluation, 2006)

Topic-Based Vietnamese News Document Filtering in the BioCaster Project. - Vu Cong Duy Hoang; Nguyen Le Nguyen; Dien Dinh; Nigel Collier (ALPIT, 2007)

The Role of Roles in Classifying Annotated Biomedical Text. - Son Doan; Ai Kawazoe; Nigel Collier (BioNLP@ACL, 2007)

Towards a Methodology for Entity Error Analysis in Annotated Corpora. - Qi Wei 008; Yuval Krymolowski; Nigel Collier (SAAKM, 2007)

Construction of a Vietnamese Corpora for Named Entity Recognition. - Thao Pham Thi Xuan; Ai Kawazoe; Dien Dinh; Nigel Collier; Tran Quoc Tri (RIAO, 2007)

Named entity recognition in Vietnamese using classifier voting. - Pham Thi Xuan Thao; Tran Quoc Tri; Dinh Dien; Nigel Collier (ACM Trans. Asian Lang. Inf. Process., 2007)

The Choice of Features for Classification of Verbs in Biomedical Texts. - Anna Korhonen; Yuval Krymolowski; Nigel Collier (COLING, 2008)

Global Health Monitor - A Web-based System for Detecting and Mapping Infectious Diseases. - Son Doan; Hung Quoc Ngo 002; Ai Kawazoe; Nigel Collier (IJCNLP, 2008)

BioCaster: detecting public health rumors with a Web-based text mining system. - Nigel Collier; Son Doan; Ai Kawazoe; Reiko Matsuda Goodwin; Mike Conway; Yoshio Tateno; Hung Quoc Ngo 002; Dinh Dien; Asanee Kawtrakul; Koichi Takeuchi; Mika Shigematsu; Kiyosu Taniguchi (Bioinform., 2008)

Structuring an event ontology for disease outbreak detection. - Ai Kawazoe; Hutchatai Chanlekha; Mika Shigematsu; Nigel Collier (BMC Bioinform., 2008)

Synonym set extraction from the biomedical literature by lexical pattern discovery. - John P. McCrae; Nigel Collier (BMC Bioinform., 2008)

Using Hedges to Enhance a Disease Outbreak Report Text Mining System. - Mike Conway; Son Doan; Nigel Collier (BioNLP@HLT-NAACL, 2009)

The development of a schema for semantic annotation: Gain brought by a formal ontological method. - Ai Kawazoe; Lihua Jin; Mika Shigematsu; Daisuke Bekki; Roberto A. Barrero; Kiyosu Taniguchi; Nigel Collier (Appl. Ontology, 2009)

Classifying disease outbreak reports using n-grams and semantic features. - Mike Conway; Son Doan; Ai Kawazoe; Nigel Collier (Int. J. Medical Informatics, 2009)

Towards role-based filtering of disease outbreak reports. - Son Doan; Ai Kawazoe; Mike Conway; Nigel Collier (J. Biomed. Informatics, 2009)

An ontology-driven system for detecting global health events. - Nigel Collier; Reiko Matsuda Goodwin; John P. McCrae; Son Doan; Ai Kawazoe; Mike Conway; Asanee Kawtrakul; Koichi Takeuchi; Dinh Dien (COLING, 2010)

OMG U got flu? Analysis of shared health messages for bio-surveillance. - Nigel Collier; Nguyen Truong Son; Mai Nguyen Thi Ngoc (Semantic Mining in Biomedicine, 2010)

Analysis of syntactic and semantic features for fine-grained event-spatial understanding in outbreak news reports. - Hutchatai Chanlekha; Nigel Collier (J. Biomed. Semant., 2010)

What's unusual in online disease outbreak news? - Nigel Collier (J. Biomed. Semant., 2010)

A methodology to enhance spatial understanding of disease outbreak events reported in news articles. - Hutchatai Chanlekha; Nigel Collier (Int. J. Medical Informatics, 2010)

Wrestling with Biomedical Research Results: Language Resources and Literature Analysis. - Dietrich Rebholz-Schuhmann; Nigel Collier; Jong C. Park; Limsoon Wong (J. Bioinform. Comput. Biol., 2010)

A framework for enhancing spatial and temporal granularity in report-based health surveillance systems. - Hutchatai Chanlekha; Ai Kawazoe; Nigel Collier (BMC Medical Informatics Decis. Mak., 2010)

An Empirical Study of Sections in Classifying Disease Outbreak Reports. - Son Doan; Mike Conway; Nigel Collier (Web-Based Applications in Healthcare and Biomedicine, 2010)

Syndromic Classification of Twitter Messages. - Nigel Collier; Son Doan (eHealth, 2011)

An Analysis of Twitter Messages in the 2011 Tohoku Earthquake. - Son Doan; Bao-Khanh Ho Vo; Nigel Collier (eHealth, 2011)

Towards cross-lingual alerting for bursty epidemic events. - Nigel Collier (J. Biomed. Semant., 2011)

OMG U got flu? Analysis of shared health messages for bio-surveillance. - Nigel Collier; Nguyen Truong Son; Ngoc Mai Nguyen (J. Biomed. Semant., 2011)

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. - Dietrich Rebholz-Schuhmann; Antonio Jimeno-Yepes; Chen Li 011; Senay Kafkas; Ian Lewin; Ning Kang 002; Peter T. Corbett; David Milward; Ekaterina Buyko; Elena Beisswanger; Kerstin Hornbostel; Alexandre Kouznetsov; et al. (J. Biomed. Semant., 2011)

Towards mature use of semantic resources for biomedical analyses. - Dietrich Rebholz-Schuhmann; Fabio Rinaldi 001; Sampo Pyysalo; Nigel Collier; Udo Hahn (J. Biomed. Semant., 2011)

A Hybrid Approach to Finding Phenotype Candidates in Genetic Texts. - Nigel Collier; Mai-Vu Tran; Hoang-Quynh Le; Anika Oellrich; Ai Kawazoe; Martin Hall-May; Dietrich Rebholz-Schuhmann (COLING, 2012)

On-line Trend Analysis with Topic Models: #twitter Trends Detection Topic Model Online. - Jey Han Lau; Nigel Collier; Timothy Baldwin (COLING, 2012)

Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses. - Son Doan; Lucila Ohno-Machado; Nigel Collier (HISB, 2012)

GENI-DB: a database of global events for epidemic intelligence. - Nigel Collier; Son Doan (Bioinform., 2012)

Recognition of medication information from discharge summaries using ensembles of classifiers. - Son Doan; Nigel Collier; Hua Xu 001; Pham Duy; Tu Minh Phuong (BMC Medical Informatics Decis. Mak., 2012)

Using silver and semi-gold standard corpora to compare open named entity recognisers. - Tudor Groza; Anika Oellrich; Nigel Collier (BIBM, 2013)

Exploring a Probabilistic Earley Parser for Event Composition in Biomedical Texts. - Mai-Vu Tran; Nigel Collier; Hoang-Quynh Le; Van-Thuy Phi; Thanh-Binh Pham (BioNLP@ACL (Shared Task), 2013)

A partially supervised cross-collection topic model for cross-domain text classification. - Yang Bao 001; Nigel Collier; Anindya Datta (CIKM, 2013)

Twitter Emotion Analysis in Earthquake Situations. - Bao-Khanh Ho Vo; Nigel Collier (Int. J. Comput. Linguistics Appl., 2013)

Change-point detection in time-series data by relative density-ratio estimation. - Song Liu 002; Makoto Yamada; Nigel Collier; Masashi Sugiyama (Neural Networks, 2013)

The impact of near domain transfer on biomedical named entity recognition. - Nigel Collier; Mai-Vu Tran; Ferdinand Paster (Louhi@EACL, 2014)

Discriminating Rhetorical Analogies in Social Media. - Christoph Lofi; Christian Nieke; Nigel Collier (EACL, 2014)

Towards the Semantic Interpretation of Personal Health Messages from Social Media. - Nut Limsopatham; Nigel Collier (UCUI@CIKM, 2015)

Adapting Phrase-based Machine Translation to Normalise Medical Terms in Social Media Messages. - Nut Limsopatham; Nigel Collier (EMNLP, 2015)

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases. - Nigel Collier; Tudor Groza; Damian Smedley; Peter N. Robinson; Anika Oellrich; Dietrich Rebholz-Schuhmann (Database J. Biol. Databases Curation, 2015)

Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora. - Tudor Groza; Sebastian Köhler 001; Sandra C. Doelken; Nigel Collier; Anika Oellrich; Damian Smedley; Francisco M. Couto; Gareth Baynam; Andreas Zankl; Peter N. Robinson (Database J. Biol. Databases Curation, 2015)

Concept selection for phenotypes and diseases using learn to rank. - Nigel Collier; Anika Oellrich; Tudor Groza (J. Biomed. Semant., 2015)

Special issue on bio-ontologies and phenotypes. - Larisa N. Soldatova; Nigel Collier; Anika Oellrich; Tudor Groza; Karin Verspoor; Philippe Rocca-Serra; Michel Dumontier; Nigam H. Shah (J. Biomed. Semant., 2015)

Crowdsourcing Twitter annotations to identify first-hand experiences of prescription drug use. - Nestor Alvaro; Mike Conway; Son Doan; Christoph Lofi; John P. Overington; Nigel Collier (J. Biomed. Informatics, 2015)

NLP and Online Health Reports: What do we say and what do we mean? - Nigel Collier (Louhi@EMNLP, 2016)

Normalising Medical Concepts in Social Media Texts by Learning Semantic Representation. - Nut Limsopatham; Nigel Collier (ACL (1), 2016)

Bidirectional LSTM for Named Entity Recognition in Twitter Messages. - Nut Limsopatham; Nigel Collier (NUT@COLING, 2016)

Modelling the Combination of Generic and Target Domain Embeddings in a Convolutional Neural Network for Sentence Classification. - Nut Limsopatham; Nigel Collier (BioNLP@ACL, 2016)

Improved Semantic Representation for Domain-Specific Entities. - Mohammad Taher Pilehvar; Nigel Collier (BioNLP@ACL, 2016)

Learning Orthographic Features in Bi-directional LSTM for Biomedical Named Entity Recognition. - Nut Limsopatham; Nigel Collier (BioTxtM@COLING 2016, 2016)

De-Conflated Semantic Representations. - Mohammad Taher Pilehvar; Nigel Collier (EMNLP, 2016)

The digital revolution in phenotyping. - Anika Oellrich; Nigel Collier; Tudor Groza; Dietrich Rebholz-Schuhmann; Nigam Shah; Olivier Bodenreider; Mary Regina Boland; Ivo I. Georgiev; Hongfang Liu; Kevin M. Livingston; Augustin Luna; Ann-Marie Mallon; et al. (Briefings Bioinform., 2016)

Sieve-based coreference resolution enhances semi-supervised learning model for chemical-induced disease relation extraction. - Hoang-Quynh Le; Mai-Vu Tran; Thanh Hai Dang; Quang-Thuy Ha; Nigel Collier (Database J. Biol. Databases Curation, 2016)

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop. - Karin Verspoor; Anika Oellrich; Nigel Collier; Tudor Groza; Philippe Rocca-Serra; Larisa N. Soldatova; Michel Dumontier; Nigam Shah (J. Biomed. Semant., 2016)

Vancouver Welcomes You! Minimalist Location Metonymy Resolution. - Milan Gritta; Mohammad Taher Pilehvar; Nut Limsopatham; Nigel Collier (ACL (1), 2017)

Towards a Seamless Integration of Word Senses into Downstream NLP Applications. - Mohammad Taher Pilehvar; José Camacho-Collados; Roberto Navigli; Nigel Collier (ACL (1), 2017)

Inducing Embeddings for Rare and Unseen Words by Leveraging Lexical Resources. - Mohammad Taher Pilehvar; Nigel Collier (EACL (2), 2017)

Improving chemical-induced disease relation extraction with learned features based on convolutional neural network. - Hoang-Quynh Le; Duy-Cat Can; Thanh Hai Dang; Mai-Vu Tran; Quang-Thuy Ha; Nigel Collier (KSE, 2017)

SemEval-2017 Task 2: Multilingual and Cross-lingual Semantic Word Similarity. - José Camacho-Collados; Mohammad Taher Pilehvar; Nigel Collier; Roberto Navigli (SemEval@ACL, 2017)

WSDM 2017 Workshop on Mining Online Health Reports: MOHRS 2017. - Nigel Collier; Nut Limsopatham; Aron Culotta; Mike Conway; Ingemar J. Cox; Vasileios Lampos (WSDM, 2017)

Learning Rare Word Representations using Semantic Bridging. - Victor Prokhorov; Mohammad Taher Pilehvar; Dimitri Kartsaklis; Pietro Liò; Nigel Collier (CoRR, 2017)

Which Melbourne? Augmenting Geocoding with Maps. - Milan Gritta; Mohammad Taher Pilehvar; Nigel Collier (ACL (1), 2018)

Modeling the Fake News Challenge as a Cross-Level Stance Detection Task. - Costanza Conforti; Mohammad Taher Pilehvar; Nigel Collier (CIKM Workshops, 2018)

Towards Automatic Fake News Detection: Cross-Level Stance Detection in News Articles. - Costanza Conforti; Mohammad Taher Pilehvar; Nigel Collier (FEVER@EMNLP, 2018)

Mapping Text to Knowledge Graph Entities using Multi-Sense LSTMs. - Dimitri Kartsaklis; Mohammad Taher Pilehvar; Nigel Collier (EMNLP, 2018)

Large-scale Exploration of Neural Relation Classification Architectures. - Hoang-Quynh Le; Duy-Cat Can; Sinh T. Vu; Thanh Hai Dang; Mohammad Taher Pilehvar; Nigel Collier (EMNLP, 2018)

Card-660: A Reliable Evaluation Framework for Rare Word Representation Models. - Mohammad Taher Pilehvar; Dimitri Kartsaklis; Victor Prokhorov; Nigel Collier (EMNLP, 2018)

Card-660: Cambridge Rare Word Dataset - a Reliable Benchmark for Infrequent Word Representation Models. - Mohammad Taher Pilehvar; Dimitri Kartsaklis; Victor Prokhorov; Nigel Collier (CoRR, 2018)

What's missing in geographical parsing? - Milan Gritta; Mohammad Taher Pilehvar; Nut Limsopatham; Nigel Collier (Lang. Resour. Evaluation, 2018)

PheneBank: Processed Medline Abstracts. - Nigel Collier; Mohammad Taher Pilehvar; Adam Bernard; Damian Smedley (Zenodo, 2018)

PheneBank: Processed Medline Abstracts and PMC full articles. - Nigel Collier; Mohammad Taher Pilehvar; Adam Bernard; Damian Smedley (Zenodo, 2018)

PheneBank: Processed Medline Abstracts and PMC full articles. - Nigel Collier; Mohammad Taher Pilehvar; Adam Bernard; Damian Smedley (Zenodo, 2018)

PheneBank: Processed Medline Abstracts and PMC full articles. - Nigel Collier; Mohammad Taher Pilehvar; Adam Bernard; Damian Smedley (Zenodo, 2018)

Unseen Word Representation by Aligning Heterogeneous Lexical Semantic Spaces. - Victor Prokhorov; Mohammad Taher Pilehvar; Dimitri Kartsaklis; Pietro Liò; Nigel Collier (AAAI, 2019)

BioReddit: Word Embeddings for User-Generated Biomedical NLP. - Marco Basaldella; Nigel Collier (LOUHI@EMNLP, 2019)

On the Importance of the Kullback-Leibler Divergence Term in Variational Autoencoders for Text Generation. - Victor Prokhorov; Ehsan Shareghi; Yingzhen Li; Mohammad Taher Pilehvar; Nigel Collier (NGT@EMNLP-IJCNLP, 2019)

A Richer-but-Smarter Shortest Dependency Path with Attentive Augmentation for Relation Extraction. - Duy-Cat Can; Hoang-Quynh Le; Quang-Thuy Ha; Nigel Collier (NAACL-HLT (1), 2019)

Generating Knowledge Graph Paths from Textual Definitions using Sequence-to-Sequence Models. - Victor Prokhorov; Mohammad Taher Pilehvar; Nigel Collier (NAACL-HLT (1), 2019)

An Empirical Study of Sections in Classifying Disease Outbreak Reports. - Son Doan; Mike Conway; Nigel Collier (CoRR, 2019)

Global Health Monitor: A Web-based System for Detecting and Mapping Infectious Diseases. - Son Doan; Quoc Hung Ngo; Ai Kawazoe; Nigel Collier (CoRR, 2019)

Will-They-Won't-They: A Very Large Dataset for Stance Detection on Twitter. - Costanza Conforti; Jakob Berndt; Mohammad Taher Pilehvar; Chryssi Giannitsarou; Flavio Toxvaerd; Nigel Collier (ACL, 2020)

COMETA: A Corpus for Medical Entity Linking in the Social Media. - Marco Basaldella; Fangyu Liu 001; Ehsan Shareghi; Nigel Collier (EMNLP (1), 2020)

STANDER: An Expert-Annotated Dataset for News Stance Detection and Evidence Retrieval. - Costanza Conforti; Jakob Berndt; Mohammad Taher Pilehvar; Chryssi Giannitsarou; Flavio Toxvaerd; Nigel Collier (EMNLP (Findings), 2020)

Stylistic Dialogue Generation via Information-Guided Reinforcement Learning Strategy. - Yixuan Su; Deng Cai 002; Yan Wang 060; Simon Baker; Anna Korhonen; Nigel Collier; Xiaojiang Liu (CoRR, 2020)

Prototype-to-Style: Dialogue Generation with Style-Aware Editing on Retrieval Memory. - Yixuan Su; Yan Wang 060; Simon Baker; Deng Cai 002; Xiaojiang Liu; Anna Korhonen; Nigel Collier (CoRR, 2020)

Hierarchical Sparse Variational Autoencoder for Text Encoding. - Victor Prokhorov; Yingzhen Li; Ehsan Shareghi; Nigel Collier (CoRR, 2020)

Self-alignment Pre-training for Biomedical Entity Representations. - Fangyu Liu 001; Ehsan Shareghi; Zaiqiao Meng; Marco Basaldella; Nigel Collier (CoRR, 2020)

A pragmatic guide to geoparsing evaluation. - Milan Gritta; Mohammad Taher Pilehvar; Nigel Collier (Lang. Resour. Evaluation, 2020)

PheneBank: Processed Medline Abstracts and PMC full articles + Phenotype-Disease Associations. - Mohammad Taher Pilehvar; Nigel Collier; Adam Bernard; Damian Smedley (Zenodo, 2020)

PheneBank: Processed Medline Abstracts and PMC full articles + Phenotype-Disease Associations. - Mohammad Taher Pilehvar; Nigel Collier; Adam Bernard; Damian Smedley (Zenodo, 2020)

Visual Pivoting for (Unsupervised) Entity Alignment. - Fangyu Liu 001; Muhao Chen 001; Dan Roth 001; Nigel Collier (AAAI, 2021)

Learning Domain-Specialised Representations for Cross-Lingual Biomedical Entity Linking. - Fangyu Liu 001; Ivan Vulic; Anna Korhonen; Nigel Collier (ACL/IJCNLP (2), 2021)

Dialogue Response Selection with Hierarchical Curriculum Learning. - Yixuan Su; Deng Cai 002; Qingyu Zhou; Zibo Lin; Simon Baker; Yunbo Cao; Shuming Shi 001; Nigel Collier; Yan Wang 060 (ACL/IJCNLP (1), 2021)

Keep the Primary, Rewrite the Secondary: A Two-Stage Approach for Paraphrase Generation. - Yixuan Su; David Vandyke; Simon Baker; Yan Wang 060; Nigel Collier (ACL/IJCNLP (Findings), 2021)

Integrating Transformers and Knowledge Graphs for Twitter Stance Detection. - Thomas Hikaru Clark; Costanza Conforti; Fangyu Liu 001; Zaiqiao Meng; Ehsan Shareghi; Nigel Collier (W-NUT, 2021)

MirrorWiC: On Eliciting Word-in-Context Representations from Pretrained Language Models. - Qianchu Liu; Fangyu Liu 001; Nigel Collier; Anna Korhonen; Ivan Vulic (CoNLL, 2021)

Adversarial Training for News Stance Detection: Leveraging Signals from a Multi-Genre Corpus. - Costanza Conforti; Jakob Berndt; Marco Basaldella; Mohammad Taher Pilehvar; Chryssi Giannitsarou; Flavio Toxvaerd; Nigel Collier (EACL (Hackashop), 2021)

Non-Autoregressive Text Generation with Pre-trained Language Models. - Yixuan Su; Deng Cai 002; Yan Wang 060; David Vandyke; Simon Baker; Piji Li; Nigel Collier (EACL, 2021)

Visually Grounded Reasoning across Languages and Cultures. - Fangyu Liu 001; Emanuele Bugliarello; Edoardo Maria Ponti; Siva Reddy; Nigel Collier; Desmond Elliott (EMNLP (1), 2021)

Fast, Effective, and Self-Supervised: Transforming Masked Language Models into Universal Lexical and Sentence Encoders. - Fangyu Liu 001; Ivan Vulic; Anna Korhonen; Nigel Collier (EMNLP (1), 2021)

Mixture-of-Partitions: Infusing Large Biomedical Knowledge Graphs into BERT. - Zaiqiao Meng; Fangyu Liu 001; Thomas Hikaru Clark; Ehsan Shareghi; Nigel Collier (EMNLP (1), 2021)

Few-Shot Table-to-Text Generation with Prototype Memory. - Yixuan Su; Zaiqiao Meng; Simon Baker; Nigel Collier (EMNLP (Findings), 2021)

Plan-then-Generate: Controlled Data-to-Text Generation via Planning. - Yixuan Su; David Vandyke; Sihui Wang; Yimai Fang; Nigel Collier (EMNLP (Findings), 2021)

Self-Alignment Pretraining for Biomedical Entity Representations. - Fangyu Liu 001; Ehsan Shareghi; Zaiqiao Meng; Marco Basaldella; Nigel Collier (NAACL-HLT, 2021)

Learning Sparse Sentence Encoding without Supervision: An Exploration of Sparsity in Variational Autoencoders. - Victor Prokhorov; Yingzhen Li; Ehsan Shareghi; Nigel Collier (RepL4NLP@ACL-IJCNLP, 2021)

Synthetic Examples Improve Cross-Target Generalization: A Study on Stance Detection on a Twitter corpus. - Costanza Conforti; Jakob Berndt; Mohammad Taher Pilehvar; Chryssi Giannitsarou; Flavio Toxvaerd; Nigel Collier (WASSA@EACL, 2021)

Fast, Effective and Self-Supervised: Transforming Masked LanguageModels into Universal Lexical and Sentence Encoders. - Fangyu Liu 001; Ivan Vulic; Anna Korhonen; Nigel Collier (CoRR, 2021)

TaCL: Improving BERT Pre-training with Token-aware Contrastive Learning. - Yixuan Su; Fangyu Liu 001; Zaiqiao Meng; Lei Shu 004; Ehsan Shareghi; Nigel Collier (CoRR, 2021)

PROTOTYPE-TO-STYLE: Dialogue Generation With Style-Aware Editing on Retrieval Memory. - Yixuan Su; Yan Wang 060; Deng Cai 002; Simon Baker; Anna Korhonen; Nigel Collier (IEEE ACM Trans. Audio Speech Lang. Process., 2021)

Incorporating Stock Market Signals for Twitter Stance Detection. - Costanza Conforti; Jakob Berndt; Mohammad Taher Pilehvar; Chryssi Giannitsarou; Flavio Toxvaerd; Nigel Collier (ACL (1), 2022)

Improving Word Translation via Two-Stage Contrastive Learning. - Yaoyiran Li; Fangyu Liu 001; Nigel Collier; Anna Korhonen; Ivan Vulic (ACL (1), 2022)

Rewire-then-Probe: A Contrastive Recipe for Probing Biomedical Knowledge of Pre-trained Language Models. - Zaiqiao Meng; Fangyu Liu 001; Ehsan Shareghi; Yixuan Su; Charlotte Collins; Nigel Collier (ACL (1), 2022)

Prix-LM: Pretraining for Multilingual Knowledge Base Construction. - Wenxuan Zhou; Fangyu Liu 001; Ivan Vulic; Nigel Collier; Muhao Chen 001 (ACL (1), 2022)

How to tackle an emerging topic? Combining strong and weak labels for Covid news NER. - Aleksander Ficek; Fangyu Liu 001; Nigel Collier (AACL/IJCNLP (2), 2022)

Do ever larger octopi still amplify reporting biases? Evidence from judgments of typical colour. - Fangyu Liu 001; Julian Martin Eisenschlos; Jeremy R. Cole; Nigel Collier (AACL/IJCNLP (2), 2022)

A Conceptual Framework for Representing Events Under Public Health Surveillance. - Anya Okhmatovskaia; Yannan Shen; Iris Ganser; Nigel Collier; Nicholas B. King; Zaiqiao Meng; David L. Buckeridge (MIE, 2022)

TaCL: Improving BERT Pre-training with Token-aware Contrastive Learning. - Yixuan Su; Fangyu Liu 001; Zaiqiao Meng; Tian Lan 003; Lei Shu 004; Ehsan Shareghi; Nigel Collier (NAACL-HLT (Findings), 2022)

A Contrastive Framework for Neural Text Generation. - Yixuan Su; Tian Lan 003; Yan Wang 060; Dani Yogatama; Lingpeng Kong; Nigel Collier (NeurIPS, 2022)

BioCaster in 2021: automatic disease outbreaks detection from global news media. - Zaiqiao Meng; Anya Okhmatovskaia; Maxime Polleri; Yannan Shen; Guido Powell; Zihao Fu; Iris Ganser; Meiru Zhang; Nicholas B. King; David L. Buckeridge; Nigel Collier (Bioinform., 2022)

PheneBank: a literature-based database of phenotypes. - Mohammad Taher Pilehvar; Adam Bernard; Damian Smedley; Nigel Collier (Bioinform., 2022)

Exploiting document graphs for inter sentence relation extraction. - Hoang-Quynh Le; Duy-Cat Can; Nigel Collier (J. Biomed. Semant., 2022)

Exposing Cross-Lingual Lexical Knowledge from Multilingual Sentence Encoders. - Ivan Vulic; Goran Glavas; Fangyu Liu 001; Nigel Collier; Edoardo Maria Ponti; Anna Korhonen (CoRR, 2022)

Language Models Can See: Plugging Visual Controls in Text Generation. - Yixuan Su; Tian Lan 003; Yahui Liu; Fangyu Liu 001; Dani Yogatama; Yan Wang 060; Lingpeng Kong; Nigel Collier (CoRR, 2022)

On Reality and the Limits of Language Data. - Nigel H. Collier; Fangyu Liu 001; Ehsan Shareghi (CoRR, 2022)

Plug-and-Play Recipe Generation with Content Planning. - Yinhong Liu; Yixuan Su; Ehsan Shareghi; Nigel Collier (CoRR, 2022)

A survey on clinical natural language processing in the United Kingdom from 2007 to 2022. - Honghan Wu; Minhong Wang 002; Jinge Wu; Farah Francis; Yun-Hsuan Chang; Alex Shavick; Hang Dong 002; Michael Tin Chung Poon; Natalie K. Fitzpatrick; Adam P. Levine; Luke T. Slater; Alex Handy; et al. (npj Digit. Medicine, 2022)

On the Effectiveness of Parameter-Efficient Fine-Tuning. - Zihao Fu; Haoran Yang; Anthony Man-Cho So; Wai Lam; Lidong Bing; Nigel Collier (AAAI, 2023)

DePlot: One-shot visual language reasoning by plot-to-table translation. - Fangyu Liu 001; Julian Martin Eisenschlos; Francesco Piccinno; Syrine Krichene; Chenxi Pang; Kenton Lee; Mandar Joshi; Wenhu Chen; Nigel Collier; Yasemin Altun (ACL (Findings), 2023)

MatCha: Enhancing Visual Language Pretraining with Math Reasoning and Chart Derendering. - Fangyu Liu 001; Francesco Piccinno; Syrine Krichene; Chenxi Pang; Kenton Lee; Mandar Joshi; Yasemin Altun; Nigel Collier; Julian Martin Eisenschlos (ACL (1), 2023)

On Reality and the Limits of Language Data: Aligning LLMs with Human Norms. - Nigel Collier; Fangyu Liu 001; Ehsan Shareghi (CogSci, 2023)

Probing Cross-Lingual Lexical Knowledge from Multilingual Sentence Encoders. - Ivan Vulic; Goran Glavas; Fangyu Liu 001; Nigel Collier; Edoardo Maria Ponti; Anna Korhonen (EACL, 2023)

Biomedical Named Entity Recognition via Dictionary-based Synonym Generalization. - Zihao Fu; Yixuan Su; Zaiqiao Meng; Nigel Collier (EMNLP, 2023)

POSQA: Probe the World Models of LLMs with Size Comparisons. - Chang Shu; Jiuzhou Han; Fangyu Liu 001; Ehsan Shareghi; Nigel Collier (EMNLP (Findings), 2023)

Repetition In Repetition Out: Towards Understanding Neural Text Degeneration from the Data Perspective. - Huayang Li; Tian Lan 003; Zihao Fu; Deng Cai 002; Lemao Liu; Nigel Collier; Taro Watanabe; Yixuan Su (NeurIPS, 2023)

A Stability Analysis of Fine-Tuning a Pre-Trained Model. - Zihao Fu; Anthony Man-Cho So; Nigel Collier (CoRR, 2023)

COFFEE: A Contrastive Oracle-Free Framework for Event Extraction. - Meiru Zhang; Yixuan Su; Zaiqiao Meng; Zihao Fu; Nigel Collier (CoRR, 2023)

Decoder-Only or Encoder-Decoder? Interpreting Language Model as a Regularized Encoder-Decoder. - Zihao Fu; Wai Lam; Qian Yu; Anthony Man-Cho So; Shengding Hu; Zhiyuan Liu 001; Nigel Collier (CoRR, 2023)

BAND: Biomedical Alert News Dataset. - Zihao Fu; Meiru Zhang; Zaiqiao Meng; Yannan Shen; Anya Okhmatovskaia; David L. Buckeridge; Nigel Collier (CoRR, 2023)

Sparkles: Unlocking Chats Across Multiple Images for Multimodal Instruction-Following Models. - Yupan Huang; Zaiqiao Meng; Fangyu Liu 001; Yixuan Su; Nigel Collier; Yutong Lu (CoRR, 2023)

FireAct: Toward Language Agent Fine-tuning. - Baian Chen; Chang Shu; Ehsan Shareghi; Nigel Collier; Karthik Narasimhan; Shunyu Yao (CoRR, 2023)

Instruct-SCTG: Guiding Sequential Controlled Text Generation through Instructions. - Yinhong Liu; Yixuan Su; Ehsan Shareghi; Nigel Collier (CoRR, 2023)

Visual Spatial Reasoning. - Fangyu Liu 001; Guy Emerson; Nigel Collier (Trans. Assoc. Comput. Linguistics, 2023)

Contrastive Search Is What You Need For Neural Text Generation. - Yixuan Su; Nigel Collier (Trans. Mach. Learn. Res., 2023)

BAND: Biomedical Alert News Dataset. - Zihao Fu; Meiru Zhang; Zaiqiao Meng; Yannan Shen; David L. Buckeridge; Nigel Collier (AAAI, 2024)

PiVe: Prompting with Iterative Verification Improving Graph-based Generative Capability of LLMs. - Jiuzhou Han; Nigel Collier; Wray L. Buntine; Ehsan Shareghi (ACL (Findings), 2024)

Quantifying the Persona Effect in LLM Simulations. - Tiancheng Hu; Nigel Collier (ACL (1), 2024)

An Individualized News Affective Response Dataset. - Tiancheng Hu; Nigel Collier (ACL (Student Research Workshop), 2024)

TOAD: Task-Oriented Automatic Dialogs with Diverse Response Styles. - Yinhong Liu; Yimai Fang; David Vandyke; Nigel Collier (ACL (Findings), 2024)

Can LLM be a Personalized Judge? - Yijiang River Dong; Tiancheng Hu; Nigel Collier (EMNLP (Findings), 2024)

TopViewRS: Vision-Language Models as Top-View Spatial Reasoners. - Chengzu Li; Caiqi Zhang; Han Zhou 010; Nigel Collier; Anna Korhonen; Ivan Vulic (EMNLP, 2024)

LUQ: Long-text Uncertainty Quantification for LLMs. - Caiqi Zhang; Fangyu Liu 001; Marco Basaldella; Nigel Collier (EMNLP, 2024)

Can We Instruct LLMs to Compensate for Position Bias? - Meiru Zhang; Zaiqiao Meng; Nigel Collier (EMNLP (Findings), 2024)

Fairer Preferences Elicit Improved Human-Aligned Large Language Model Judgments. - Han Zhou 010; Xingchen Wan; Yinhong Liu; Nigel Collier; Ivan Vulic; Anna Korhonen (EMNLP, 2024)

Unlocking Structure Measuring: Introducing PDD, an Automatic Metric for Positional Discourse Coherence. - Yinhong Liu; Yixuan Su; Ehsan Shareghi; Nigel Collier (NAACL (Short Papers), 2024)

Aligning with Human Judgement: The Role of Pairwise Preference in Large Language Model Evaluators. - Yinhong Liu; Han Zhou 010; Zhijiang Guo; Ehsan Shareghi; Ivan Vulic; Anna Korhonen; Nigel Collier (CoRR, 2024)

Attention Instruction: Amplifying Attention in the Middle via Prompting. - Meiru Zhang; Zaiqiao Meng; Nigel Collier (CoRR, 2024)

Aligning with Logic: Measuring, Evaluating and Improving Logical Consistency in Large Language Models. - Yinhong Liu; Zhijiang Guo; Tianya Liang; Ehsan Shareghi; Ivan Vulic; Nigel Collier (CoRR, 2024)

Atomic Calibration of LLMs in Long-Form Generations. - Caiqi Zhang; Ruihan Yang; Zhisong Zhang; Xinting Huang; Sen Yang; Dong Yu 001; Nigel Collier (CoRR, 2024)

iNews: A Multimodal Dataset for Modeling Personalized Affective Responses to News. - Tiancheng Hu; Nigel Collier (ACL (1), 2025)

500xCompressor: Generalized Prompt Compression for Large Language Models. - Zongqian Li; Yixuan Su; Nigel Collier (ACL (1), 2025)

LoGU: Long-form Generation with Uncertainty Expressions. - Ruihan Yang; Caiqi Zhang; Zhisong Zhang; Xinting Huang; Sen Yang; Nigel Collier; Dong Yu 001; Deqing Yang (ACL (1), 2025)

Conformity in Large Language Models. - Xiaochen Zhu; Caiqi Zhang; Tom Stafford 002; Nigel Collier; Andreas Vlachos 001 (ACL (1), 2025)

Prompt Compression for Large Language Models: A Survey. - Zongqian Li; Yinhong Liu; Yixuan Su; Nigel Collier (NAACL (Long Papers), 2025)

Generative language models exhibit social identity biases. - Tiancheng Hu; Yara Kyrychenko; Steve Rathje; Nigel Collier; Sander van der Linden; Jon Roozenbeek (Nat. Comput. Sci., 2025)

When Personalization Meets Reality: A Multi-Faceted Analysis of Personalized Preference Learning. - Yijiang River Dong; Tiancheng Hu; Yinhong Liu; Ahmet Üstün; Nigel Collier (CoRR, 2025)

ReasonGraph: Visualisation of Reasoning Paths. - Zongqian Li; Ehsan Shareghi; Nigel Collier (CoRR, 2025)

PT-MoE: An Efficient Finetuning Framework for Integrating Mixture-of-Experts into Prompt Tuning. - Zongqian Li; Yixuan Su; Nigel Collier (CoRR, 2025)

UNCLE: Uncertainty Expressions in Long-Form Generation. - Ruihan Yang; Caiqi Zhang; Zhisong Zhang; Xinting Huang; Dong Yu 001; Nigel Collier; Deqing Yang (CoRR, 2025)

Reinforcement Learning for Better Verbalized Confidence in Long-Form Generation. - Caiqi Zhang; Xiaochen Zhu; Chengzu Li; Nigel Collier; Andreas Vlachos 001 (CoRR, 2025)

A Survey on Prompt Tuning. - Zongqian Li; Yixuan Su; Nigel Collier (CoRR, 2025)

Multi-Trigger Poisoning Amplifies Backdoor Vulnerabilities in LLMs. - Sanhanat Sivapiromrat; Caiqi Zhang; Marco Basaldella; Nigel Collier (CoRR, 2025)

TRIDENT: Benchmarking LLM Safety in Finance, Medicine, and Law. - Zheng Hui; Yijiang River Dong; Ehsan Shareghi; Nigel Collier (CoRR, 2025)