MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays. - Eric C. Rouchka; Abdelnaby Khalyfa; Nigel G. F. Cooper (BMC Bioinform., 2005)

Analysis of probe level patterns in Affymetrix microarray data. - Alexander C. Cambon; Abdelnaby Khalyfa; Nigel G. F. Cooper; Caryn M. Thompson (BMC Bioinform., 2007)

Microarray analysis of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio). - Julie B. Schuck; Michael E. Smith 001; Xiaohong Li 005; Nigel G. F. Cooper (BMC Bioinform., 2008)

Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements. - Eric C. Rouchka; Xiangping Wang; James H. Graham; Nigel G. F. Cooper (BICoB, 2009)

Microarray analysis and quantitative real-time PCR validation of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio). - Julie B. Schuck; Chia-Hui Lin; William T. Penberthy; Xiaohong Li 005; Nigel G. F. Cooper; Michael E. Smith 001 (BMC Bioinform., 2009)

The UofL Microarray Facility: merger and new location. - Sabine J. Waigel; Xiaohong Li 005; Yinlu Chen; Vennila Arumugam; Nigel G. F. Cooper; Wolfgang Zacharias (BMC Bioinform., 2010)

Classification of clinical outcomes using high-throughput informatics: Part 1 - nonparametric method reviews. - Alexander C. Cambon; Kathy B. Baumgartner; Guy N. Brock; Nigel G. F. Cooper; Dongfeng Wu; Shesh N. Rai (Model. Assist. Stat. Appl., 2015)

Classification of clinical outcomes using high-throughput informatics: Part 2 - parametric method reviews. - Alexander C. Cambon; Kathy B. Baumgartner; Guy N. Brock; Nigel G. F. Cooper; Dongfeng Wu; Shesh N. Rai (Model. Assist. Stat. Appl., 2015)

Analysis and visualization of a literature-mined glaucoma gene interaction network. - Maha Soliman; Olfa Nasraoui; Nigel G. F. Cooper (ASONAM, 2016)

Building a glaucoma interaction network using a text mining approach. - Maha Soliman; Olfa Nasraoui; Nigel G. F. Cooper (BioData Min., 2016)

Properties of adaptive clinical trial signature design in the presence of gene and gene-treatment interaction. - Alexander C. Cambon; Kathy B. Baumgartner; Guy N. Brock; Nigel G. F. Cooper; Dongfeng Wu; Shesh N. Rai (Commun. Stat. Simul. Comput., 2017)

seekCRIT: Detecting and characterizing differentially expressed circular RNAs using high-throughput sequencing data. - Mohamed Chaabane; Kalina Andreeva; Jae Yeon Hwang; Tae Lim Kook; Juw Won Park; Nigel G. F. Cooper (PLoS Comput. Biol., 2020)