Random Matrix Approach to the Distribution of Genomic Distance. - Nikita Alexeev; Peter Zograf (J. Comput. Biol., 2014)

Generalized Hultman Numbers and the Distribution of Multi-break Distances. - Nikita Alexeev; Anna Pologova; Max A. Alekseyev (AlCoB, 2015)

Estimation of the true evolutionary distance under the fragile breakage model. - Nikita Alexeev; Max A. Alekseyev (ICCABS, 2015)

A Computational Method for the Rate Estimation of Evolutionary Transpositions. - Nikita Alexeev; Rustem Aidagulov; Max A. Alekseyev (IWBBIO (1), 2015)

Combinatorial Scoring of Phylogenetic Networks. - Nikita Alexeev; Max A. Alekseyev (COCOON, 2016)

Comparative genomics meets topology: a novel view on genome median and halving problems. - Nikita Alexeev; Pavel Avdeyev; Max A. Alekseyev (BMC Bioinform., 2016)

A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems Under DCJ. - Pavel Avdeyev; Nikita Alexeev; Yongwu Rong; Max A. Alekseyev (RECOMB-CG, 2017)

Generalized Hultman Numbers and Cycle Structures of Breakpoint Graphs. - Nikita Alexeev; Anna Pologova; Max A. Alekseyev (J. Comput. Biol., 2017)

Estimation of the True Evolutionary Distance Under the INFER Model. - Alexey Zabelkin; Nikita Alexeev (RECOMB-CG, 2018)

Combinatorial Scoring of Phylogenetic Trees and Networks Based on Homoplasy-Free Characters. - Nikita Alexeev; Max A. Alekseyev (J. Comput. Biol., 2018)

Recovering rearranged cancer chromosomes from karyotype graphs. - Sergey Aganezov; Ilya Zban; Vitaly Aksenov; Nikita Alexeev; Michael C. Schatz (BMC Bioinform., 2019)

A unified ILP framework for core ancestral genome reconstruction problems. - Pavel Avdeyev; Nikita Alexeev; Yongwu Rong; Max A. Alekseyev (Bioinform., 2020)

Markov chain Monte Carlo for active module identification problem. - Nikita Alexeev; Javlon E. Isomurodov; Vladimir Sukhov; Gennady Korotkevich; Alexey A. Sergushichev (BMC Bioinform., 2020)

Chromothripsis Rearrangements Are Informed by 3D-Genome Organization. - Natalia Petukhova; Alexey Zabelkin; Vitaly Dravgelis; Sergey Aganezov; Nikita Alexeev (RECOMB-CG, 2022)

PaReBrick: PArallel REarrangements and BReaks identification toolkit. - Alexey Zabelkin; Yulia Yakovleva; Olga Bochkareva; Nikita Alexeev (Bioinform., 2022)

Orienting Ordered Scaffolds: Complexity and Algorithms. - Sergey Aganezov; Pavel Avdeyev; Nikita Alexeev; Yongwu Rong; Max A. Alekseyev (SN Comput. Sci., 2022)