Modeling of the structure and interactions of the B. anthracis antitoxin, MoxX: deletion mutant studies highlight its modular structure and repressor function. - Nikita Chopra; Shivangi Agarwal; Shashikala Verma; Sonika Bhatnagar; Rakesh Bhatnagar (J. Comput. Aided Mol. Des., 2011)

Dynamic Allostery Mediated by a Conserved Tryptophan in the Tec Family Kinases. - Nikita Chopra; Thomas E. Wales; Raji E. Joseph; Scott E. Boyken; John R. Engen; Robert L. Jernigan; Amy H. Andreotti (PLoS Comput. Biol., 2016)

Toward Lung Tumor Localization based on Strain Variability of Lung Surface during Video-Assisted Thoracoscopic Surgery. - Nikita Chopra; Chloe O. Nicholson-Smith; Mahya Shahbazi; Richard Malthaner; Rajni V. Patel (EMBC, 2018)

Data Races and Static Analysis for Interrupt-Driven Kernels. - Nikita Chopra; Rekha R. Pai; Deepak D'Souza (ESOP, 2019)

Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery. - Yuqi Zhang 003; Márton Vass; Da Shi; Esam Abualrous; Jennifer M. Chambers; Nikita Chopra; Christopher Higgs; Koushik Kasavajhala; Hubert Li; Prajwal Nandekar; Hideyuki Sato; Edward B. Miller; et al. (J. Chem. Inf. Model., 2023)

Enabling In-Silico Hit Discovery Workflows Targeting RNA with Small Molecules. - Nikita Chopra; Ara M. Abramyan; Zeineb Si Chaib; Wei Chen; Yeyue Xiong; Anna Bochicchio; David Rinaldo; Steven V. Jerome; Yuqi Zhang 003 (J. Chem. Inf. Model., 2025)