compomics-utilities: an open-source Java library for computational proteomics. - Harald Barsnes; Marc Vaudel; Niklaas Colaert; Kenny Helsens; Albert Sickmann; Frode S. Berven; Lennart Martens (BMC Bioinform., 2011)

The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events. - Niklaas Colaert; Davy Maddelein; Francis Impens; Petra Van Damme; Kim Plasman; Kenny Helsens; Niels Hulstaert; Joël Vandekerckhove; Kris Gevaert; Lennart Martens (Nucleic Acids Res., 2013)

The iceLogo web server and SOAP service for determining protein consensus sequences. - Davy Maddelein; Niklaas Colaert; Iain Buchanan; Niels Hulstaert; Kris Gevaert; Lennart Martens (Nucleic Acids Res., 2015)