Confidence Measures for Fold Recognition. - Ingolf Sommer; Niklas von Öhsen; Alexander Zien; Ralf Zimmer; Thomas Lengauer (German Conference on Bioinformatics, 2001)

Improving Profile-Profile Alignments via Log Average Scoring. - Niklas von Öhsen; Ralf Zimmer (WABI, 2001)

Confidence measures for protein fold recognition. - Ingolf Sommer; Alexander Zien; Niklas von Öhsen; Ralf Zimmer; Thomas Lengauer (Bioinform., 2002)

Profile-Profile Alignment: A Powerful Tool for Protein Structure Prediction. - Niklas von Öhsen; Ingolf Sommer; Ralf Zimmer (Pacific Symposium on Biocomputing, 2003)

Combining Secondary Structure Element Alignment and Profile-Profile Alignment for Fold Recognition. - Jan E. Gewehr; Niklas von Öhsen; Ralf Zimmer (German Conference on Bioinformatics, 2004)

Arby: automatic protein structure prediction using profile-profile alignment and confidence measures. - Niklas von Öhsen; Ingolf Sommer; Ralf Zimmer; Thomas Lengauer (Bioinform., 2004)