METIS: a flexible database foundation for unified media management. - Ross King; Niko Popitsch; Utz Westermann (ACM Multimedia, 2004)

Ylvi - Multimedia-izing the Semantic Wiki. - Niko Popitsch; Bernhard Schandl; Arash Amiri; Stefan Leitich; Wolfgang Jochum (SemWiki, 2006)

METIS: a flexible foundation for the unified management of multimedia assets. - Ross King; Niko Popitsch; Utz Westermann (Multim. Tools Appl., 2007)

Semantic Wikis: Conclusions from Real-World Projects With Ylvi. - Niko Popitsch; Bernhard Schandl; Ross King (ECIS, 2008)

DSNotify - Detecting and Fixing Broken Links in Linked Data Sets. - Bernhard Haslhofer; Niko Popitsch (DEXA Workshops, 2009)

An Evaluation Approach for Dynamics-Aware Applications Using Linked Data. - Niko Popitsch; Bernhard Haslhofer; Elaheh Momeni Roochi (DEXA Workshops, 2010)

UROBE: A Prototype For Wiki Preservation. - Niko Popitsch; Robert Mosser; Wolfgang Philipp (iPRES, 2010)

DSNotify: handling broken links in the web of data. - Niko Popitsch; Bernhard Haslhofer (WWW, 2010)

Lifting File Systems into the Linked Data Cloud with TripFS. - Bernhard Schandl; Niko Popitsch (LDOW, 2010)

The MEKETREpository - Middle Kingdom Tomb and Artwork Descriptions on the Web. - Christian Mader; Bernhard Haslhofer; Niko Popitsch (TPDL, 2011)

Keep your triples together: modeling a RESTtful, layered linked data store. - Niko Popitsch (I-SEMANTICS, 2011)

DSNotify - A solution for event detection and link maintenance in dynamic datasets. - Niko Popitsch; Bernhard Haslhofer (J. Web Semant., 2011)

CODOC: efficient access, analysis and compression of depth of coverage signals. - Niko Popitsch (Bioinform., 2014)

ReliableGenome: annotation of genomic regions with high/low variant calling concordance. - Niko Popitsch; WGS500 Consortium; Anna Schuh; Jenny C. Taylor (Bioinform., 2017)

Deep SNP: An End-to-end Deep Neural Network with Attention-based Localization for Break-point Detection in SNP Array Genomic data. - Hamid Eghbal-zadeh; Lukas Fischer 001; Niko Popitsch; Florian Kromp; Sabine Taschner-Mandl; Khaled Koutini; Teresa Gerber; Eva Bozsaky; Peter F. Ambros; Inge M. Ambros; Gerhard Widmer; Bernhard Alois Moser (CoRR, 2018)

VARAN-GIE: curation of genomic interval sets. - Niko Popitsch (Bioinform., 2019)

DeepSNP: An End-to-End Deep Neural Network with Attention-Based Localization for Breakpoint Detection in Single-Nucleotide Polymorphism Array Genomic Data. - Hamid Eghbal-Zadeh; Lukas Fischer 001; Niko Popitsch; Florian Kromp; Sabine Taschner-Mandl; Teresa Gerber; Eva Bozsaky; Peter F. Ambros; Inge M. Ambros; Gerhard Widmer; Bernhard Alois Moser (J. Comput. Biol., 2019)

Nanopanel2 calls phased low-frequency variants in Nanopore panel sequencing data. - Niko Popitsch; Sandra Preuner; Thomas Lion (Bioinform., 2021)