Fast algorithms and heuristics for phylogenomics under ILS and hybridization. - Yun Yu; Nikola Ristic; Luay Nakhleh (BMC Bioinform., 2013)

Voronoia 4-ever. - René Staritzbichler; Nikola Ristic; Andrean Goede; Robert Preissner; Peter Werner Hildebrand (Nucleic Acids Res., 2021)

Predicting 2H NMR acyl chain order parameters with graph neural networks. - Markus Fischer; Benedikt Schwarze; Nikola Ristic; Holger A. Scheidt (Comput. Biol. Chem., 2022)

AlignMe: an update of the web server for alignment of membrane protein sequences. - René Staritzbichler; Emily Yaklich; Edoardo Sarti; Nikola Ristic; Peter W. Hildebrand; Lucy R. Forrest (Nucleic Acids Res., 2022)

SmoothT - a server constructing low-energy pathways from conformational ensembles for interactive visualization and enhanced sampling. - René Staritzbichler; Nikola Ristic; Tülin Stapke; Peter W. Hildebrand (Bioinform., 2023)