CoCo: coding cost for parameter-free outlier detection. - Christian Böhm 001; Katrin Haegler; Nikola S. Müller; Claudia Plant (KDD, 2009)

Robust Second-Order Source Separation Identifies Experimental Responses in Biomedical Imaging. - Fabian J. Theis; Nikola S. Müller; Claudia Plant; Christian Böhm 001 (LVA/ICA, 2010)

Weighted Graph Compression for Parameter-free Clustering With PaCCo. - Nikola Müller; Katrin Haegler; Junming Shao; Claudia Plant; Christian Böhm 001 (SDM, 2011)

Finding correlations and independences in omics data. - Nikola Müller (2012)

Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data. - Andrea Ocone; Laleh Haghverdi; Nikola S. Müller; Fabian J. Theis (Bioinform., 2015)

RAMONA: a Web application for gene set analysis on multilevel omics data. - Steffen Sass; Florian Buettner 002; Nikola S. Müller; Fabian J. Theis (Bioinform., 2015)

MetaExp: Interactive Explanation and Exploration of Large Knowledge Graphs. - Freya Behrens; Sebastian Bischoff 001; Pius Ladenburger; Julius Rückin; Laurenz Seidel; Fabian Stolp; Michael Vaichenker; Adrian Ziegler; Davide Mottin; Fatemeh Aghaei; Emmanuel Müller; Martin Preusse; et al. (WWW (Companion Volume), 2018)

netReg: network-regularized linear models for biological association studies. - Simon Dirmeier; Christiane Fuchs; Nikola S. Müller; Fabian J. Theis (Bioinform., 2018)

Clustering of Mixed-Type Data Considering Concept Hierarchies. - Sahar Behzadi; Nikola S. Müller; Claudia Plant; Christian Böhm 001 (PAKDD (1), 2019)

Genome-wide functional association networks: background, data & state-of-the-art resources. - Dimitri Guala; Christoph Ogris; Nikola Müller; Erik L. L. Sonnhammer (Briefings Bioinform., 2020)

Copy number aberrations from Affymetrix SNP 6.0 genotyping data - how accurate are commonly used prediction approaches? - Adriana Pitea; Ivan Kondofersky; Steffen Sass; Fabian J. Theis; Nikola S. Müller; Kristian Unger (Briefings Bioinform., 2020)

Clustering of mixed-type data considering concept hierarchies: problem specification and algorithm. - Sahar Behzadi; Nikola S. Müller; Claudia Plant; Christian Böhm 001 (Int. J. Data Sci. Anal., 2020)

DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning. - Janine Arloth; Gökcen Eraslan; Till F. M. Andlauer; Jade Martins; Stella Iurato; Brigitte Kühnel; Melanie Waldenberger; Josef Frank; Ralf Gold; Bernhard Hemmer; Felix Luessi; Sandra Nischwitz; et al. (PLoS Comput. Biol., 2020)