VIPER: an advanced software package to support high-throughput LC-MS peptide identification. - Matthew E. Monroe; Nikola Tolic; Navdeep Jaitly; Jason L. Shaw; Joshua N. Adkins; Richard D. Smith (Bioinform., 2007)

Identification of Ultramodified Proteins Using Top-Down Spectra. - Xiaowen Liu; Shawna Hengel; Si Wu; Nikola Tolic; Ljiljana Pasa-Tolic; Pavel A. Pevzner (RECOMB, 2013)

Top-down analysis of protein samples by de novo sequencing techniques. - Kira Vyatkina; Si Wu; Lennard J. Dekker; Martijn M. VanDuijn; Xiaowen Liu; Nikola Tolic; Theo M. Luider; Ljiljana Pasa-Tolic; Pavel A. Pevzner (Bioinform., 2016)

A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra. - Qiang Kou; Si Wu; Nikola Tolic; Ljiljana Pasa-Tolic; Yunlong Liu; Xiaowen Liu (Bioinform., 2017)

Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Molecules in Synthetic Blinded Samples. - Jamie R. Nuñez; Sean M. Colby; Dennis G. Thomas; Malak M. Tfaily; Nikola Tolic; Elin M. Ulrich; Jon R. Sobus; Thomas O. Metz; Justin G. Teeguarden; Ryan S. Renslow (J. Chem. Inf. Model., 2019)