Pathway Commons, a web resource for biological pathway data. - Ethan G. Cerami; Benjamin E. Gross; Emek Demir; Igor V. Rodchenkov; Özgün Babur; Nadia Anwar; Nikolaus Schultz; Gary D. Bader; Chris Sander (Nucleic Acids Res., 2011)

Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles. - Bülent Arman Aksoy; Emek Demir; Özgün Babur; Weiqing Wang; Xiaohong Jing; Nikolaus Schultz; Chris Sander (Bioinform., 2014)

BridgeDb app: unifying identifier mapping services for Cytoscape. - Jianjiong Gao; Chao Zhang 032; Martijn P. van Iersel; Li Zhang; Dong Xu 002; Nikolaus Schultz; Alexander R. Pico (F1000Research, 2014)

Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma. - Kjong-Van Lehmann; André Kahles; Cyriac Kandoth; William Lee; Nikolaus Schultz; Oliver Stegle; Gunnar Rätsch (Pacific Symposium on Biocomputing, 2015)

rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R. - Augustin Luna; Vinodh N. Rajapakse; Fabricio G. Sousa; Jianjiong Gao; Nikolaus Schultz; Sudhir Varma; William C. Reinhold; Chris Sander; Yves Pommier (Bioinform., 2016)

MutationAligner: a resource of recurrent mutation hotspots in protein domains in cancer. - Nicholas Paul Gauthier; Ed Reznik; Jianjiong Gao; Selçuk Onur Sümer; Nikolaus Schultz; Chris Sander; Martin L. Miller (Nucleic Acids Res., 2016)

A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers. - Yasin Senbabaoglu; Selçuk Onur Sümer; Francisco Sánchez-Vega; Debra Bemis; Giovanni Ciriello; Nikolaus Schultz; Chris Sander (PLoS Comput. Biol., 2016)

PathwayMapper: a collaborative visual web editor for cancer pathways and genomic data. - Istemi Bahceci; Ugur Dogrusoz; Konnor C. La; Özgün Babur; Jianjiong Gao; Nikolaus Schultz (Bioinform., 2017)

G2S: a web-service for annotating genomic variants on 3D protein structures. - Juexin Wang; Robert Sheridan; Selçuk Onur Sümer; Nikolaus Schultz; Dong Xu 002; Jianjiong Gao (Bioinform., 2018)

Autonomous Artificial Intelligence Agents for Clinical Decision Making in Oncology. - Dyke Ferber; Omar S. M. El Nahhas; Georg Wölflein; Isabella C. Wiest; Jan Clusmann; Marie-Elisabeth Leßman; Sebastian Foersch; Jacqueline Lammert; Maximilian Tschochohei; Dirk Jäger; Manuel Salto-Tellez; Nikolaus Schultz; et al. (CoRR, 2024)

Large language model trained on clinical oncology data predicts cancer progression. - Menglei Zhu; Hui Lin; Jue Jiang; Abbas J. Jinia; Justin Jee; Karl Pichotta; Michele Waters; Doori Rose; Nikolaus Schultz; Sulov Chalise; Lohit Valleru; Olivier Morin; et al. (npj Digit. Medicine, 2025)