Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices. - Victor B. Strelets; Ilya N. Shindyalov; Nikolay A. Kolchanov; Luciano Milanesi (Comput. Appl. Biosci., 1992)

SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites. - Alexander E. Kel; Mikhail P. Ponomarenko; E. A. Likhachev; Yuri L. Orlov; I. V. Ischenko; Luciano Milanesi; Nikolay A. Kolchanov (Comput. Appl. Biosci., 1993)

Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3'-terminal processing sites. - Yury V. Kondrakhin; V. V. Shamin; Nikolay A. Kolchanov (Comput. Appl. Biosci., 1994)

Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes. - O. V. Kel; A. G. Romachenko; Alexander E. Kel; Andrey N. Naumochkin; Nikolay A. Kolchanov (HICSS (5), 1995)

Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences. - Alexander E. Kel; Yury V. Kondrakhin; Ph. A. Kolpakov; O. V. Kel; Aida G. Romashchenko; Edgar Wingender; Luciano Milanesi; Nikolay A. Kolchanov (ISMB, 1995)

Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application. - Nikolay A. Kolchanov; Oleg V. Vishnevsky; Vladimir N. Babenko; Alexander E. Kel; Ilya N. Shindyalov (ISMB, 1995)

Eukaryotic promoter recognition by binding sites for transcription factors. - Yury V. Kondrakhin; Alexander E. Kel; Nikolay A. Kolchanov; Aida G. Romashchenko; Luciano Milanesi (Comput. Appl. Biosci., 1995)

WWWTRRD: Hypertext Information System an Transcription Regulation. - Elena A. Ananko; Elena V. Ignatieva; Alexander E. Kel; Nikolay A. Kolchanov (German Conference on Bioinformatics, 1996)

Comparative Analysis of the Secondary Structure of mRNA Encoded by High- and Low-Expression Eukaryotic Genes. - I. V. Ischenko; Alexey V. Kochetov; Alexander E. Kel; Nikolay A. Kolchanov; L. L. Kisselev (German Conference on Bioinformatics, 1996)

TRRD and COMPEL Databases an Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences. - Alexander E. Kel; O. V. Kel; I. V. Ischenko; Nikolay A. Kolchanov; Holger Karas; Edgar Wingender; Heinz Sklenar (German Conference on Bioinformatics, 1996)

TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences. - Alexander E. Kel; O. V. Kel; Oleg V. Vishnevsky; Mikhail P. Ponomarenko; I. V. Ischenko; Holger Karas; Edgar Wingender; Nikolay A. Kolchanov; Heinz Sklenar (German Conference on Bioinformatics - Selected Papers, 1996)

Genetic Algorithm for Selection of Oligonucleotides for Identification by Hybridisation of Genomic DNA Fragments Possessing Gene Potential. - Alexander E. Kel; M. Philipenko; Vladimir N. Babenko; Nikolay A. Kolchanov (German Conference on Bioinformatics, 1996)

Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes. - Yury V. Kondrakhin; Fedor A. Kolpakov; Alexander E. Kel; Nikolay A. Kolchanov; Luciano Milanesi (German Conference on Bioinformatics, 1996)

Gene structure prediction using information on homologous protein sequence. - Igor B. Rogozin; Luciano Milanesi; Nikolay A. Kolchanov (Comput. Appl. Biosci., 1996)

Detecting direct correlations between positions in multiple alignments of amino acid sequences. - Dmitry A. Afonnikov; Yury V. Kondrakhin; Igor I. Titov; Nikolay A. Kolchanov (German Conference on Bioinformatics, 1997)

Lipid Metabolism Transcription Regulatory Regions Database (LM-TRRD). - Elena V. Ignatieva; Alexander E. Kel; Nikolay A. Kolchanov (German Conference on Bioinformatics, 1997)

Identification of the significant conformational features of functional sites in B-DNA. - Mikhail P. Ponomarenko; Julia V. Ponomarenko; Alexander E. Kel; Nikolay A. Kolchanov; N. Karas; Edgar Wingender; Heinz Sklenar (German Conference on Bioinformatics, 1997)

Generating Programs for Predicting the Activity of Functional Sites. - Mikhail P. Ponomarenko; A. N. Kolchanova; Nikolay A. Kolchanov (J. Comput. Biol., 1997)

TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation. - Edgar Wingender; Alexander E. Kel; Olga V. Kel-Margoulis; Holger Karas; T. Heinemeyer; P. Dietze; Rainer Knüppel; Aida G. Romashchenko; Nikolay A. Kolchanov (Nucleic Acids Res., 1997)

Combinatorial identification of promoters induced upon immune cell activation. - Alexander E. Kel; Olga V. Kel-Margoulis; Vladimir N. Babenko; Nikolay A. Kolchanov; Edgar Wingender (German Conference on Bioinformatics, 1998)

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. - Nikolay A. Kolchanov; Mikhail P. Ponomarenko; Alexander E. Kel; Yury V. Kondrakhin; Anatoly S. Frolov; Fedor A. Kolpakov; T. N. Goryachkovskaya; O. V. Kel; Elena A. Ananko; Elena V. Ignatieva; Olga A. Podkolodnaya; Vladimir N. Babenko; et al. (ISMB, 1998)

GeneNet: a gene network database and its automated visualization. - Fedor A. Kolpakov; Elena A. Ananko; G. B. Kolesov; Nikolay A. Kolchanov (Bioinform., 1998)

Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. - T. Heinemeyer; Edgar Wingender; Ingmar Reuter; Henning Hermjakob; Alexander E. Kel; Olga V. Kel-Margoulis; Elena V. Ignatieva; Elena A. Ananko; Olga A. Podkolodnaya; Fedor A. Kolpakov; Nikolay L. Podkolodny; Nikolay A. Kolchanov (Nucleic Acids Res., 1998)

Prediction of eukaryotic mRNA translational properties. - Alexey V. Kochetov; Mikhail P. Ponomarenko; Anatoly S. Frolov; L. L. Kisselev; Nikolay A. Kolchanov (Bioinform., 1999)

Integrated databases and computer systems for studying eukaryotic gene expression. - Nikolay A. Kolchanov; Mikhail P. Ponomarenko; Anatoly S. Frolov; Elena A. Ananko; Fedor A. Kolpakov; Elena V. Ignatieva; Olga A. Podkolodnaya; T. N. Goryachkovskaya; Irina L. Stepanenko; Tatyana I. Merkulova; V. V. Babenko; Y. V. Ponomarenko; et al. (Bioinform., 1999)

Nucleosomal DNA property database. - Victor G. Levitsky; Mikhail P. Ponomarenko; Julia V. Ponomarenko; Anatoly S. Frolov; Nikolay A. Kolchanov (Bioinform., 1999)

Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. - Mikhail P. Ponomarenko; Julia V. Ponomarenko; Anatoly S. Frolov; Nikolay L. Podkolodny; Ludmila K. Savinkova; Nikolay A. Kolchanov; G. Christian Overton (Bioinform., 1999)

Oligonucleotide frequency matrices addressed to recognizing functional DNA sites. - Mikhail P. Ponomarenko; Julia V. Ponomarenko; Anatoly S. Frolov; Olga A. Podkolodnaya; Denis G. Vorobiev; Nikolay A. Kolchanov; G. Christian Overton (Bioinform., 1999)

Conformational and physicochemical DNA features specific for transcription factor binding sites. - Julia V. Ponomarenko; Mikhail P. Ponomarenko; Anatoly S. Frolov; Denis G. Vorobiev; G. Christian Overton; Nikolay A. Kolchanov (Bioinform., 1999)

Transcription Regulatory Regions Database (TRRD): its status in 1999. - Nikolay A. Kolchanov; Elena A. Ananko; Olga A. Podkolodnaya; Elena V. Ignatieva; Irina L. Stepanenko; Olga V. Kel-Margoulis; Alexander E. Kel; Tatyana I. Merkulova; T. N. Goryachkovskaya; T. V. Busygina; Fedor A. Kolpakov; Nikolay L. Podkolodny; et al. (Nucleic Acids Res., 1999)

COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation. - Olga V. Kel-Margoulis; Aida G. Romashchenko; Nikolay A. Kolchanov; Edgar Wingender; Alexander E. Kel (Nucleic Acids Res., 2000)

Transcription Regulatory Regions Database (TRRD): its status in 2000. - Nikolay A. Kolchanov; Olga A. Podkolodnaya; Elena A. Ananko; Elena V. Ignatieva; Irina L. Stepanenko; Olga V. Kel-Margoulis; Alexander E. Kel; Tatyana I. Merkulova; T. N. Goryachkovskaya; T. V. Busygina; Fedor A. Kolpakov; Nikolay L. Podkolodny; et al. (Nucleic Acids Res., 2000)

SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation. - Julia V. Ponomarenko; Galina Orlova; Mikhail P. Ponomarenko; Sergey V. Lavryushev; Anatoly S. Frolov; Svetlana V. Zybova; Nikolay A. Kolchanov (Nucleic Acids Res., 2000)

Methods for integration of heterogeneous information resources in molecular biology in the digital library GeneExpress. - Fedor A. Kolpakov; N. L. Podkolodnyi; Sergey V. Lavryushev; Dmitry A. Grigorovich; Mikhail P. Ponomarenko; Nikolay A. Kolchanov (Program. Comput. Softw., 2000)

Program "Gene Discovery" for Pattern Matching in Promoter Sequences. - Yuri L. Orlov; Evgenii E. Vityaev 001; Oleg V. Vishnevsky; A. S. Belenok; Boris Kovalerchuk; Mikhail A. Pozdnyakov; Nikolay A. Kolchanov (German Conference on Bioinformatics, 2001)

Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions. - Dmitry A. Afonnikov; Dmitry Yu. Oshchepkov; Nikolay A. Kolchanov (Bioinform., 2001)

The 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000. - Nikolay A. Kolchanov; Charlie Hodgman (Bioinform., 2001)

Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis. - Victor G. Levitsky; Olga A. Podkolodnaya; Nikolay A. Kolchanov; Nikolay L. Podkolodny (Bioinform., 2001)

Nucleosome formation potential of exons, introns, and Alu repeats. - Victor G. Levitsky; Olga A. Podkolodnaya; Nikolay A. Kolchanov; Nikolay L. Podkolodny (Bioinform., 2001)

ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. - Julia V. Ponomarenko; Dagmara P. Furman; Anatoly S. Frolov; Nikolay L. Podkolodny; Galina Orlova; Mikhail P. Ponomarenko; Nikolay A. Kolchanov; Akinori Sarai (Nucleic Acids Res., 2001)

Gene Networks Description and Modeling in the GeneNet System. - Nikolay A. Kolchanov; Elena A. Ananko; Vitali A. Likhoshvai; Olga A. Podkolodnaya; Elena V. Ignatieva; Alexander V. Ratushny; Yuri G. Matushkin (Gene Regulations and Metabolism, 2002)

Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface). - Ralf Hofestädt; Nikolay A. Kolchanov; John Reinitz (Silico Biol., 2002)

GeneNet database: description and modeling of gene networks. - Nikolay A. Kolchanov; Eugenia A. Nedosekina; Elena A. Ananko; Vitali A. Likhoshvai; Nikolay L. Podkolodny; Alexander V. Ratushny; Irina L. Stepanenko; Olga A. Podkolodnaya; Elena V. Ignatieva; Yuri G. Matushkin (Silico Biol., 2002)

Construction of stochastic context trees for genetical texts. - Yuri L. Orlov; V. P. Filippov; Vladimir N. Potapov; Nikolay A. Kolchanov (Silico Biol., 2002)

Computer system "Gene Discovery" for promoter structure analysis. - Evgenii E. Vityaev 001; Yuri L. Orlov; Oleg V. Vishnevsky; Mikhail A. Pozdnyakov; Nikolay A. Kolchanov (Silico Biol., 2002)

GeneNet: a database on structure and functional organisation of gene networks. - Elena A. Ananko; Nikolay L. Podkolodny; Irina L. Stepanenko; Elena V. Ignatieva; Olga A. Podkolodnaya; Nikolay A. Kolchanov (Nucleic Acids Res., 2002)

Transcription Regulatory Regions Database (TRRD): its status in 2002. - Nikolay A. Kolchanov; Elena V. Ignatieva; Elena A. Ananko; Olga A. Podkolodnaya; Irina L. Stepanenko; Tatyana I. Merkulova; Mikhail A. Pozdnyakov; Nikolay L. Podkolodny; Andrey N. Naumochkin; Aida G. Romashchenko (Nucleic Acids Res., 2002)

ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro. - Vadim P. Valuev; Dmitry A. Afonnikov; Mikhail P. Ponomarenko; Luciano Milanesi; Nikolay A. Kolchanov (Nucleic Acids Res., 2002)

The 3rd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS 2002) - Preface. - Nikolay A. Kolchanov; Ralf Hofestädt (Silico Biol., 2003)

CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences. - Dmitry A. Afonnikov; Nikolay A. Kolchanov (Nucleic Acids Res., 2004)

PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins. - Vladimir A. Ivanisenko; Sergey S. Pintus; Dmitry A. Grigorovich; Nikolay A. Kolchanov (Nucleic Acids Res., 2004)

GeneNet in 2005. - Elena A. Ananko; Nikolay L. Podkolodny; Irina L. Stepanenko; Olga A. Podkolodnaya; D. A. Rasskazov; Denis S. Miginsky; Vitali A. Likhoshvai; Alexander V. Ratushny; N. N. Podkolodnaya; Nikolay A. Kolchanov (Nucleic Acids Res., 2005)

WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families. - Vladimir A. Ivanisenko; Alexey M. Eroshkin; Nikolay A. Kolchanov (Nucleic Acids Res., 2005)

PDBSite: a database of the 3D structure of protein functional sites. - Vladimir A. Ivanisenko; Sergey S. Pintus; Dmitry A. Grigorovich; Nikolay A. Kolchanov (Nucleic Acids Res., 2005)

NPRD: Nucleosome Positioning Region Database. - Victor G. Levitsky; Aleksey V. Katokhin; Olga A. Podkolodnaya; Dagmara P. Furman; Nikolay A. Kolchanov (Nucleic Acids Res., 2005)

ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters. - Oleg V. Vishnevsky; Nikolay A. Kolchanov (Nucleic Acids Res., 2005)

Analysis of Protein Functional Site Distribution on Gene Structure. - Irina Medvedeva; Pavel Demenkov; Vladimir A. Ivanisenko; Nikolay A. Kolchanov (BIOCOMP, 2007)

From Published Expression and Phenotype Data to Structured Knowledge: The Arabidopsis Gene Net Supplementary Database and Its Applications. - Denis K. Ponomaryov; Nadezhda Omelianchuk; Victoria V. Mironova; Eugene Zalevsky; Nikolay L. Podkolodny; Eric Mjolsness; Nikolay A. Kolchanov (KONT/KPP, 2007)

Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes. - Nikolay A. Kolchanov; Tatyana I. Merkulova; Elena V. Ignatieva; Elena A. Ananko; Dmitry Yu. Oshchepkov; Victor G. Levitsky; Gennady V. Vasiliev; Nataly V. Klimova; Vasily M. Merkulov; T. Charles Hodgman (Briefings Bioinform., 2007)

Recognition of interferon-inducible sites, promoters, and enhancers. - Elena A. Ananko; Yury V. Kondrakhin; Tatyana I. Merkulova; Nikolay A. Kolchanov (BMC Bioinform., 2007)

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. - Alexey V. Kochetov; Andrey Palyanov; Igor I. Titov; Dmitry A. Grigorovich; Akinori Sarai; Nikolay A. Kolchanov (BMC Bioinform., 2007)

Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions. - Victor G. Levitsky; Elena V. Ignatieva; Elena A. Ananko; Igor I. Turnaev; Tatyana I. Merkulova; Nikolay A. Kolchanov; T. Charles Hodgman (BMC Bioinform., 2007)

The Evolution of the Hh-Signaling Pathway Genes: A Computer-Assisted Study. - Konstantin V. Gunbin; Dmitry A. Afonnikov; Nikolay A. Kolchanov (Silico Biol., 2007)

Simulation of Coevolution in Community by Using the "Evolutionary Constructor" Program. - Sergey A. Lashin; Valentin V. Suslov; Nikolay A. Kolchanov; Yuri G. Matushkin (Silico Biol., 2007)

Fifth International Conference on Bioinformatics of Genome Regulation and Structure-BGRS'2006. - Sergei N. Rodin; Nikolay A. Kolchanov (Silico Biol., 2007)

A Cellular Automaton to Model the Development of Primary Shoot Meristems of Arabidopsis thaliana. - Ilya R. Akberdin; Evgeniy A. Ozonov; Victoria V. Mironova; Nadezda A. Omelyanchuk; Vitali A. Likhoshvai; Dmytry N. Gorpinchenko; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2007)

Model of the reception of Hedgehog morphogen concentration Gradient: Comparison with an Extended Range of Experimental Data. - Konstantin V. Gunbin; Leonid V. Omelyanchuk; Vladislav V. Kogai; Stanislav I. Fadeev; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2007)

Application of Bioinformatics Resources for Genosensor Design. - Tamara M. Khlebodarova; Nina V. Tikunova; Alla V. Kachko; Irina L. Stepanenko; Nikolay L. Podkolodny; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2007)

Mathematical Model for Suppression of Subgenomic Hepatitis C Virus RNA Replication in Cell Culture. - Elena L. Mishchenko; Kirill D. Bezmaternykh; Vitali A. Likhoshvai; Alexander V. Ratushny; Tamara M. Khlebodarova; Natalia Yu. Sournina; Vladimir A. Ivanisenko; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2007)

TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes. - Nikolay A. Kolchanov; Elena V. Ignatieva; Olga A. Podkolodnaya; Elena A. Ananko; Tamara M. Khlebodarova; Irina L. Stepanenko; Tatyana I. Merkulova; Vasily M. Merkulov; Nikolay L. Podkolodny; Aida G. Romashchenko (Intell. Data Anal., 2008)

Genetic algorithm and optimized weight matrix application for peroxisome proliferator response elements recognition: Prerequisites of accuracy growth for wide genome research. - Victor G. Levitsky; Elena V. Ignatieva; Eugenia Aman; Tatyana I. Merkulova; Nikolay A. Kolchanov; T. Charles Hodgman (Intell. Data Anal., 2008)

A plausible mechanism for auxin patterning along the developing root. - Victoria V. Mironova; Nadezda A. Omelyanchuk; Guy Yosiphon; Stanislav I. Fadeev; Nikolay A. Kolchanov; Eric Mjolsness; Vitali A. Likhoshvai (BMC Syst. Biol., 2010)

Snps in the HIV-1 TATA Box and the Aids pandemic. - Valentin V. Suslov; Petr M. Ponomarenko; Vadim M. Efimov; Ludmila K. Savinkova; Mikhail P. Ponomarenko; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2010)

Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. - Björn Sommer 001; Evgeny S. Tiys; Benjamin Kormeier; Klaus Hippe; Sebastian Janowski; Timofey V. Ivanisenko; Anatoly O. Bragin; Patrizio Arrigo; Pavel Demenkov; Alexey V. Kochetov; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; et al. (J. Integr. Bioinform., 2010)

ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem. - Pavel Demenkov; Timofey V. Ivanisenko; Nikolay A. Kolchanov; Vladimir A. Ivanisenko (Silico Biol., 2012)

SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes. - Irina V. Medvedeva 001; Pavel Demenkov; Nikolay A. Kolchanov; Vladimir A. Ivanisenko (Nucleic Acids Res., 2012)

Enhanced Differential Evolution Entirely Parallel Method for Biomedical Applications. - Konstantin Kozlov; Nikita Ivanisenko; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; Maria Samsonova; Alexander M. Samsonov (PaCT, 2013)

Introductory Note for Bgrs-2012 Special Issue. - Nikolay A. Kolchanov; Yuriy L. Orlov (J. Bioinform. Comput. Biol., 2013)

How Multiple Auxin Responsive Elements May Interact in plant promoters: a Reverse Problem solution. - Victoria V. Mironova; Nadezda A. Omelyanchuk; Maria S. Savina; Petr M. Ponomarenko; Mikhail P. Ponomarenko; Vitali A. Likhoshvai; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2013)

Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. - Björn Sommer 001; Benjamin Kormeier; Pavel Demenkov; Patrizio Arrigo; Klaus Hippe; Özgür Ates; Alexey V. Kochetov; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; Ralf Hofestädt (J. Bioinform. Comput. Biol., 2013)

Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome). - Andrey S. Glotov; Evgeny S. Tiys; Elena S. Vashukova; Vladimir S. Pakin; Pavel S. Demenkov; Olga V. Saik; Timofey V. Ivanisenko; Olga N. Arzhanova; Elena V. Mozgovaya; Marina S. Zainulina; Nikolay A. Kolchanov; Vladislav S. Baranov; et al. (BMC Syst. Biol., 2015)

ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. - Vladimir A. Ivanisenko; Olga V. Saik; Nikita V. Ivanisenko; Evgeny S. Tiys; Timofey V. Ivanisenko; Pavel S. Demenkov; Nikolay A. Kolchanov (BMC Syst. Biol., 2015)

Permanent proteins in the urine of healthy humans during the Mars-500 experiment. - Irina M. Larina; Lyudmila Kh. Pastushkova; Evgeny S. Tiys; Kirill S. Kireev; Alexey S. Kononikhin; Natalia L. Starodubtseva; Igor A. Popov; Marc-Antoine Custaud; Igor V. Dobrokhotov; Evgeny N. Nikolaev; Nikolay A. Kolchanov; Vladimir A. Ivanisenko (J. Bioinform. Comput. Biol., 2015)

Introductory note for BGRS SB-2014 special issue. - Yuriy L. Orlov; Ralf Hofestädt; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2015)

Large scale analysis of amino acid substitutions in bacterial proteomics. - Dmitry S. Ischenko; Dmitry G. Alexeev; Egor Shitikov; Alexandra Kanygina; Maja Malakhova; Elena S. Kostryukova; Andrey Larin; Sergey Kovalchuk; Olga Pobeguts; Ivan Butenko; Nikolay A. Kolchanov; Ilya A. Altukhov; et al. (BMC Bioinform., 2016)

Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions. - Kirill E. Medvedev; Nikolay A. Kolchanov; Dmitry A. Afonnikov (J. Bioinform. Comput. Biol., 2017)

Editorial - Bioinformatics development at the BGRS SB conference series: 10th anniversary. - Yuriy L. Orlov; Nikolay A. Kolchanov; Ralf Hofestädt; Limsoon Wong (J. Bioinform. Comput. Biol., 2017)

Introduction to the 9th Young Scientists School on Systems Biology and Bioinformatics (SBB'2017). - Yuriy L. Orlov; Tatiana V. Tatarinova; Maksim V. Zakhartsev; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2018)

Argo_CUDA: Exhaustive GPU based approach for motif discovery in large DNA datasets. - Oleg V. Vishnevsky; Andrey V. Bocharnikov; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2018)

Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection. - Evgeniya A. Antropova; Tamara M. Khlebodarova; Pavel S. Demenkov; Anastasiia R. Volianskaia; Artur S. Venzel; Nikita V. Ivanisenko; Alexandr D. Gavrilenko; Timofey V. Ivanisenko; Anna V. Adamovskaya; Polina M. Revva; Nikolay A. Kolchanov; Inna N. Lavrik; et al. (J. Integr. Bioinform., 2024)

BGRS: bioinformatics of genome regulation and data integration. - Yuriy L. Orlov; Ming Chen 005; Nikolay A. Kolchanov; Ralf Hofestädt (J. Integr. Bioinform., 2024)